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Ab initio reconstruction from one-dimensional crystal diffraction data

Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would pr...

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Detalles Bibliográficos
Autores principales: Arnal, Romain D., Millane, Rick P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062830/
https://www.ncbi.nlm.nih.gov/pubmed/35502716
http://dx.doi.org/10.1107/S2053273322001942
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author Arnal, Romain D.
Millane, Rick P.
author_facet Arnal, Romain D.
Millane, Rick P.
author_sort Arnal, Romain D.
collection PubMed
description Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would present some advantages, since cylindrical averaging of the diffraction data in conventional fiber diffraction analysis is avoided, there is coherent signal amplification relative to single-particle imaging, and the diffraction data are oversampled compared with those from a 3D crystal so that the phase problem is better determined than for a 3D crystal [Millane (2017). Acta Cryst. A73, 140–150]. Phasing of 1D crystal diffraction data is examined, by simulation, using an iterative projection algorithm. Ab initio phasing is feasible with realistic noise levels and little envelope information is required if a shrink-wrap algorithm is also incorporated. Some practical aspects of the proposed experiments are explored.
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spelling pubmed-90628302022-05-16 Ab initio reconstruction from one-dimensional crystal diffraction data Arnal, Romain D. Millane, Rick P. Acta Crystallogr A Found Adv Research Papers Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would present some advantages, since cylindrical averaging of the diffraction data in conventional fiber diffraction analysis is avoided, there is coherent signal amplification relative to single-particle imaging, and the diffraction data are oversampled compared with those from a 3D crystal so that the phase problem is better determined than for a 3D crystal [Millane (2017). Acta Cryst. A73, 140–150]. Phasing of 1D crystal diffraction data is examined, by simulation, using an iterative projection algorithm. Ab initio phasing is feasible with realistic noise levels and little envelope information is required if a shrink-wrap algorithm is also incorporated. Some practical aspects of the proposed experiments are explored. International Union of Crystallography 2022-04-05 /pmc/articles/PMC9062830/ /pubmed/35502716 http://dx.doi.org/10.1107/S2053273322001942 Text en © Arnal and Millane 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Arnal, Romain D.
Millane, Rick P.
Ab initio reconstruction from one-dimensional crystal diffraction data
title Ab initio reconstruction from one-dimensional crystal diffraction data
title_full Ab initio reconstruction from one-dimensional crystal diffraction data
title_fullStr Ab initio reconstruction from one-dimensional crystal diffraction data
title_full_unstemmed Ab initio reconstruction from one-dimensional crystal diffraction data
title_short Ab initio reconstruction from one-dimensional crystal diffraction data
title_sort ab initio reconstruction from one-dimensional crystal diffraction data
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062830/
https://www.ncbi.nlm.nih.gov/pubmed/35502716
http://dx.doi.org/10.1107/S2053273322001942
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