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Ab initio reconstruction from one-dimensional crystal diffraction data
Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would pr...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062830/ https://www.ncbi.nlm.nih.gov/pubmed/35502716 http://dx.doi.org/10.1107/S2053273322001942 |
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author | Arnal, Romain D. Millane, Rick P. |
author_facet | Arnal, Romain D. Millane, Rick P. |
author_sort | Arnal, Romain D. |
collection | PubMed |
description | Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would present some advantages, since cylindrical averaging of the diffraction data in conventional fiber diffraction analysis is avoided, there is coherent signal amplification relative to single-particle imaging, and the diffraction data are oversampled compared with those from a 3D crystal so that the phase problem is better determined than for a 3D crystal [Millane (2017). Acta Cryst. A73, 140–150]. Phasing of 1D crystal diffraction data is examined, by simulation, using an iterative projection algorithm. Ab initio phasing is feasible with realistic noise levels and little envelope information is required if a shrink-wrap algorithm is also incorporated. Some practical aspects of the proposed experiments are explored. |
format | Online Article Text |
id | pubmed-9062830 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-90628302022-05-16 Ab initio reconstruction from one-dimensional crystal diffraction data Arnal, Romain D. Millane, Rick P. Acta Crystallogr A Found Adv Research Papers Filamentary and rod-like assemblies are ubiquitous in biological systems, and single such assemblies can form one-dimensional (1D) crystals. New, intense X-ray sources, such as X-ray free-electron lasers, make it feasible to measure diffraction data from single 1D crystals. Such experiments would present some advantages, since cylindrical averaging of the diffraction data in conventional fiber diffraction analysis is avoided, there is coherent signal amplification relative to single-particle imaging, and the diffraction data are oversampled compared with those from a 3D crystal so that the phase problem is better determined than for a 3D crystal [Millane (2017). Acta Cryst. A73, 140–150]. Phasing of 1D crystal diffraction data is examined, by simulation, using an iterative projection algorithm. Ab initio phasing is feasible with realistic noise levels and little envelope information is required if a shrink-wrap algorithm is also incorporated. Some practical aspects of the proposed experiments are explored. International Union of Crystallography 2022-04-05 /pmc/articles/PMC9062830/ /pubmed/35502716 http://dx.doi.org/10.1107/S2053273322001942 Text en © Arnal and Millane 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Arnal, Romain D. Millane, Rick P. Ab initio reconstruction from one-dimensional crystal diffraction data |
title |
Ab initio reconstruction from one-dimensional crystal diffraction data |
title_full |
Ab initio reconstruction from one-dimensional crystal diffraction data |
title_fullStr |
Ab initio reconstruction from one-dimensional crystal diffraction data |
title_full_unstemmed |
Ab initio reconstruction from one-dimensional crystal diffraction data |
title_short |
Ab initio reconstruction from one-dimensional crystal diffraction data |
title_sort | ab initio reconstruction from one-dimensional crystal diffraction data |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062830/ https://www.ncbi.nlm.nih.gov/pubmed/35502716 http://dx.doi.org/10.1107/S2053273322001942 |
work_keys_str_mv | AT arnalromaind abinitioreconstructionfromonedimensionalcrystaldiffractiondata AT millanerickp abinitioreconstructionfromonedimensionalcrystaldiffractiondata |