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Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study

The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effec...

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Autores principales: Mancinelli, Michele, Franzini, Roberta, Renzetti, Andrea, Marotta, Emanuela, Villani, Claudio, Mazzanti, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9064610/
https://www.ncbi.nlm.nih.gov/pubmed/35515261
http://dx.doi.org/10.1039/c9ra03526e
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author Mancinelli, Michele
Franzini, Roberta
Renzetti, Andrea
Marotta, Emanuela
Villani, Claudio
Mazzanti, Andrea
author_facet Mancinelli, Michele
Franzini, Roberta
Renzetti, Andrea
Marotta, Emanuela
Villani, Claudio
Mazzanti, Andrea
author_sort Mancinelli, Michele
collection PubMed
description The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effects of different functionals and basis sets in the geometry optimization step is very limited in terms of the resulting optimized geometries, whereas the inclusion of the solvent in the calculations has a much larger effect on the correct evaluation of the conformational ratio. B3LYP and M06-2x were found to be the most accurate functionals for geometry optimization. CAM-B3LYP and ωB97X-D provided the best results in the TD-DFT simulations.
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spelling pubmed-90646102022-05-04 Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study Mancinelli, Michele Franzini, Roberta Renzetti, Andrea Marotta, Emanuela Villani, Claudio Mazzanti, Andrea RSC Adv Chemistry The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effects of different functionals and basis sets in the geometry optimization step is very limited in terms of the resulting optimized geometries, whereas the inclusion of the solvent in the calculations has a much larger effect on the correct evaluation of the conformational ratio. B3LYP and M06-2x were found to be the most accurate functionals for geometry optimization. CAM-B3LYP and ωB97X-D provided the best results in the TD-DFT simulations. The Royal Society of Chemistry 2019-06-10 /pmc/articles/PMC9064610/ /pubmed/35515261 http://dx.doi.org/10.1039/c9ra03526e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Mancinelli, Michele
Franzini, Roberta
Renzetti, Andrea
Marotta, Emanuela
Villani, Claudio
Mazzanti, Andrea
Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title_full Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title_fullStr Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title_full_unstemmed Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title_short Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
title_sort determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9064610/
https://www.ncbi.nlm.nih.gov/pubmed/35515261
http://dx.doi.org/10.1039/c9ra03526e
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