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Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study
The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effec...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9064610/ https://www.ncbi.nlm.nih.gov/pubmed/35515261 http://dx.doi.org/10.1039/c9ra03526e |
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author | Mancinelli, Michele Franzini, Roberta Renzetti, Andrea Marotta, Emanuela Villani, Claudio Mazzanti, Andrea |
author_facet | Mancinelli, Michele Franzini, Roberta Renzetti, Andrea Marotta, Emanuela Villani, Claudio Mazzanti, Andrea |
author_sort | Mancinelli, Michele |
collection | PubMed |
description | The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effects of different functionals and basis sets in the geometry optimization step is very limited in terms of the resulting optimized geometries, whereas the inclusion of the solvent in the calculations has a much larger effect on the correct evaluation of the conformational ratio. B3LYP and M06-2x were found to be the most accurate functionals for geometry optimization. CAM-B3LYP and ωB97X-D provided the best results in the TD-DFT simulations. |
format | Online Article Text |
id | pubmed-9064610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90646102022-05-04 Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study Mancinelli, Michele Franzini, Roberta Renzetti, Andrea Marotta, Emanuela Villani, Claudio Mazzanti, Andrea RSC Adv Chemistry The assignment of the absolute configuration (AC) of two conformational flexible organic molecules by means of TD-DFT simulation of the electronic circular dichroism (ECD) spectra is presented. The factors leading to a reliable assignment were evaluated in the various steps of the process. The effects of different functionals and basis sets in the geometry optimization step is very limited in terms of the resulting optimized geometries, whereas the inclusion of the solvent in the calculations has a much larger effect on the correct evaluation of the conformational ratio. B3LYP and M06-2x were found to be the most accurate functionals for geometry optimization. CAM-B3LYP and ωB97X-D provided the best results in the TD-DFT simulations. The Royal Society of Chemistry 2019-06-10 /pmc/articles/PMC9064610/ /pubmed/35515261 http://dx.doi.org/10.1039/c9ra03526e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Mancinelli, Michele Franzini, Roberta Renzetti, Andrea Marotta, Emanuela Villani, Claudio Mazzanti, Andrea Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title | Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title_full | Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title_fullStr | Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title_full_unstemmed | Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title_short | Determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
title_sort | determination of the absolute configuration of conformationally flexible molecules by simulation of chiro-optical spectra: a case study |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9064610/ https://www.ncbi.nlm.nih.gov/pubmed/35515261 http://dx.doi.org/10.1039/c9ra03526e |
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