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A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma
Background: Although many genes related to epithelial-mesenchymal transition (EMT) have been explored in hepatocellular carcinoma (HCC), their prognostic significance still needs further analysis. Methods: Differentially expressed EMT-related genes were obtained through the integrated analysis of 4...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9065556/ https://www.ncbi.nlm.nih.gov/pubmed/35517787 http://dx.doi.org/10.3389/fphar.2022.863750 |
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author | Kong, Weihao Mao, Zhongxiang Han, Chen Ding, Zhenxing Yuan, Qianqian Zhang, Gaosong Li, Chong Wu, Xuesheng Chen, Jia Guo, Manyu Hong, Shaocheng Yu, Feng Liu, Rongqiang Wang, Xingyu Zhang, Jianlin |
author_facet | Kong, Weihao Mao, Zhongxiang Han, Chen Ding, Zhenxing Yuan, Qianqian Zhang, Gaosong Li, Chong Wu, Xuesheng Chen, Jia Guo, Manyu Hong, Shaocheng Yu, Feng Liu, Rongqiang Wang, Xingyu Zhang, Jianlin |
author_sort | Kong, Weihao |
collection | PubMed |
description | Background: Although many genes related to epithelial-mesenchymal transition (EMT) have been explored in hepatocellular carcinoma (HCC), their prognostic significance still needs further analysis. Methods: Differentially expressed EMT-related genes were obtained through the integrated analysis of 4 Gene expression omnibus (GEO) datasets. The univariate Cox regression and Lasso Cox regression models are utilized to determine the EMT-related gene signature. Based on the results of multivariate Cox regression, a predictive nomogram is established. Time-dependent ROC curve and calibration curve are used to show the distinguishing ability and consistency of the nomogram. Finally, we explored the correlation between EMT risk score and immune immunity. Results: We identified a nine EMT-related gene signature to predict the survival outcome of HCC patients. Based on the EMT risk score’s median, HCC patients in each dataset were divided into high and low-risk groups. The survival outcomes of HCC patients in the high-risk group were significantly worse than those in the low-risk group. The prediction nomogram based on the EMT risk score has better distinguishing ability and consistency. High EMT risk score was related to immune infiltration. Conclusion: The nomogram based on the EMT risk score can reliably predict the survival outcome of HCC patients, thereby providing benefits for medical decisions. |
format | Online Article Text |
id | pubmed-9065556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90655562022-05-04 A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma Kong, Weihao Mao, Zhongxiang Han, Chen Ding, Zhenxing Yuan, Qianqian Zhang, Gaosong Li, Chong Wu, Xuesheng Chen, Jia Guo, Manyu Hong, Shaocheng Yu, Feng Liu, Rongqiang Wang, Xingyu Zhang, Jianlin Front Pharmacol Pharmacology Background: Although many genes related to epithelial-mesenchymal transition (EMT) have been explored in hepatocellular carcinoma (HCC), their prognostic significance still needs further analysis. Methods: Differentially expressed EMT-related genes were obtained through the integrated analysis of 4 Gene expression omnibus (GEO) datasets. The univariate Cox regression and Lasso Cox regression models are utilized to determine the EMT-related gene signature. Based on the results of multivariate Cox regression, a predictive nomogram is established. Time-dependent ROC curve and calibration curve are used to show the distinguishing ability and consistency of the nomogram. Finally, we explored the correlation between EMT risk score and immune immunity. Results: We identified a nine EMT-related gene signature to predict the survival outcome of HCC patients. Based on the EMT risk score’s median, HCC patients in each dataset were divided into high and low-risk groups. The survival outcomes of HCC patients in the high-risk group were significantly worse than those in the low-risk group. The prediction nomogram based on the EMT risk score has better distinguishing ability and consistency. High EMT risk score was related to immune infiltration. Conclusion: The nomogram based on the EMT risk score can reliably predict the survival outcome of HCC patients, thereby providing benefits for medical decisions. Frontiers Media S.A. 2022-04-20 /pmc/articles/PMC9065556/ /pubmed/35517787 http://dx.doi.org/10.3389/fphar.2022.863750 Text en Copyright © 2022 Kong, Mao, Han, Ding, Yuan, Zhang, Li, Wu, Chen, Guo, Hong, Yu, Liu, Wang and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Kong, Weihao Mao, Zhongxiang Han, Chen Ding, Zhenxing Yuan, Qianqian Zhang, Gaosong Li, Chong Wu, Xuesheng Chen, Jia Guo, Manyu Hong, Shaocheng Yu, Feng Liu, Rongqiang Wang, Xingyu Zhang, Jianlin A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title | A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title_full | A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title_fullStr | A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title_full_unstemmed | A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title_short | A Novel Epithelial-Mesenchymal Transition Gene Signature Correlated With Prognosis, and Immune Infiltration in Hepatocellular Carcinoma |
title_sort | novel epithelial-mesenchymal transition gene signature correlated with prognosis, and immune infiltration in hepatocellular carcinoma |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9065556/ https://www.ncbi.nlm.nih.gov/pubmed/35517787 http://dx.doi.org/10.3389/fphar.2022.863750 |
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