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The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses

BACKGROUND: Long noncoding RNA (lncRNA) is involved in the occurrence and development of diabetic kidney disease (DKD). It is necessary to identify the expression of lncRNA from DKD patients through systematic reviews, and then carry out silico analyses to recognize the dysregulated lncRNA and their...

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Autores principales: Zhao, Yunyun, Yan, Guanchi, Mi, Jia, Wang, Guoqiang, Yu, Miao, Jin, Di, Tong, Xiaolin, Wang, Xiuge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9068318/
https://www.ncbi.nlm.nih.gov/pubmed/35528328
http://dx.doi.org/10.1155/2022/8400106
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author Zhao, Yunyun
Yan, Guanchi
Mi, Jia
Wang, Guoqiang
Yu, Miao
Jin, Di
Tong, Xiaolin
Wang, Xiuge
author_facet Zhao, Yunyun
Yan, Guanchi
Mi, Jia
Wang, Guoqiang
Yu, Miao
Jin, Di
Tong, Xiaolin
Wang, Xiuge
author_sort Zhao, Yunyun
collection PubMed
description BACKGROUND: Long noncoding RNA (lncRNA) is involved in the occurrence and development of diabetic kidney disease (DKD). It is necessary to identify the expression of lncRNA from DKD patients through systematic reviews, and then carry out silico analyses to recognize the dysregulated lncRNA and their associated pathways. METHODS: The study searched Pubmed, Embase, Cochrane Library, WanFang, VIP, CNKI, and CBM to find lncRNA studies on DKD published before March 1, 2021. Systematic review of the literature on this topic was conducted to determine the expression of lncRNA in DKD and non-DKD controls. For the dysregulated lncRNA in DKD patients, silico analysis was performed, and lncRNA2Target v2.0 and starBase were used to search for potential target genes of lncRNA. The Encyclopedia of Genomics (KEGG) pathway enrichment analysis was performed to better identify dysregulated lncRNAs in DKD and determine the associated signal pathways. RESULTS: According to the inclusion and exclusion criteria, 28 publications meeting the eligibility criteria were included in the systematic evaluation. A total of 3,394 patients were enrolled in this study, including 1,238 patients in DKD group, and 1,223 diabetic patients, and 933 healthy adults in control group. Compared with the control, there were eight lncRNA disorders in DKD patients (MALAT1, GAS5, MIAT, CASC2, NEAT1, NR_033515, ARAP1-AS2, and ARAP1-AS1). In addition, five lncRNAs (MALAT1, GAS5, MIAT, CASC2, and NEAT1) participated in disease-related signal pathways, indicating their role in DKD. Discussion. This study showed that there were eight lncRNAs in DKD that were persistently dysregulated, especially five lncRNAs which were closely related to the disease. Although systematic review included 28 studies that analyzed the expression of lncRNA in DKD-related tissues, the potential of these dysregulated lncRNAs as biomarkers or therapeutic targets for DKD remains to be further explored. Trial registration. PROSPERO (CRD42021248634).
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spelling pubmed-90683182022-05-05 The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses Zhao, Yunyun Yan, Guanchi Mi, Jia Wang, Guoqiang Yu, Miao Jin, Di Tong, Xiaolin Wang, Xiuge Comput Intell Neurosci Review Article BACKGROUND: Long noncoding RNA (lncRNA) is involved in the occurrence and development of diabetic kidney disease (DKD). It is necessary to identify the expression of lncRNA from DKD patients through systematic reviews, and then carry out silico analyses to recognize the dysregulated lncRNA and their associated pathways. METHODS: The study searched Pubmed, Embase, Cochrane Library, WanFang, VIP, CNKI, and CBM to find lncRNA studies on DKD published before March 1, 2021. Systematic review of the literature on this topic was conducted to determine the expression of lncRNA in DKD and non-DKD controls. For the dysregulated lncRNA in DKD patients, silico analysis was performed, and lncRNA2Target v2.0 and starBase were used to search for potential target genes of lncRNA. The Encyclopedia of Genomics (KEGG) pathway enrichment analysis was performed to better identify dysregulated lncRNAs in DKD and determine the associated signal pathways. RESULTS: According to the inclusion and exclusion criteria, 28 publications meeting the eligibility criteria were included in the systematic evaluation. A total of 3,394 patients were enrolled in this study, including 1,238 patients in DKD group, and 1,223 diabetic patients, and 933 healthy adults in control group. Compared with the control, there were eight lncRNA disorders in DKD patients (MALAT1, GAS5, MIAT, CASC2, NEAT1, NR_033515, ARAP1-AS2, and ARAP1-AS1). In addition, five lncRNAs (MALAT1, GAS5, MIAT, CASC2, and NEAT1) participated in disease-related signal pathways, indicating their role in DKD. Discussion. This study showed that there were eight lncRNAs in DKD that were persistently dysregulated, especially five lncRNAs which were closely related to the disease. Although systematic review included 28 studies that analyzed the expression of lncRNA in DKD-related tissues, the potential of these dysregulated lncRNAs as biomarkers or therapeutic targets for DKD remains to be further explored. Trial registration. PROSPERO (CRD42021248634). Hindawi 2022-04-27 /pmc/articles/PMC9068318/ /pubmed/35528328 http://dx.doi.org/10.1155/2022/8400106 Text en Copyright © 2022 Yunyun Zhao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Article
Zhao, Yunyun
Yan, Guanchi
Mi, Jia
Wang, Guoqiang
Yu, Miao
Jin, Di
Tong, Xiaolin
Wang, Xiuge
The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title_full The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title_fullStr The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title_full_unstemmed The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title_short The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
title_sort impact of lncrna on diabetic kidney disease: systematic review and in silico analyses
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9068318/
https://www.ncbi.nlm.nih.gov/pubmed/35528328
http://dx.doi.org/10.1155/2022/8400106
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