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Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

BACKGROUND: The gaur (Bos gaurus) is the largest extant wild bovine species, native to South and Southeast Asia, with unique traits, and is listed as vulnerable by the International Union for Conservation of Nature (IUCN). RESULTS: We report the first gaur reference genome and identify three biologi...

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Autores principales: Low, Wai Yee, Rosen, Benjamin D., Ren, Yan, Bickhart, Derek M., To, Thu-Hien, Martin, Fergal J., Billis, Konstantinos, Sonstegard, Tad S., Sullivan, Shawn T., Hiendleder, Stefan, Williams, John L., Heaton, Michael P., Smith, Timothy P. L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9069736/
https://www.ncbi.nlm.nih.gov/pubmed/35508966
http://dx.doi.org/10.1186/s12864-022-08561-1
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author Low, Wai Yee
Rosen, Benjamin D.
Ren, Yan
Bickhart, Derek M.
To, Thu-Hien
Martin, Fergal J.
Billis, Konstantinos
Sonstegard, Tad S.
Sullivan, Shawn T.
Hiendleder, Stefan
Williams, John L.
Heaton, Michael P.
Smith, Timothy P. L.
author_facet Low, Wai Yee
Rosen, Benjamin D.
Ren, Yan
Bickhart, Derek M.
To, Thu-Hien
Martin, Fergal J.
Billis, Konstantinos
Sonstegard, Tad S.
Sullivan, Shawn T.
Hiendleder, Stefan
Williams, John L.
Heaton, Michael P.
Smith, Timothy P. L.
author_sort Low, Wai Yee
collection PubMed
description BACKGROUND: The gaur (Bos gaurus) is the largest extant wild bovine species, native to South and Southeast Asia, with unique traits, and is listed as vulnerable by the International Union for Conservation of Nature (IUCN). RESULTS: We report the first gaur reference genome and identify three biological pathways including lysozyme activity, proton transmembrane transporter activity, and oxygen transport with significant changes in gene copy number in gaur compared to other mammals. These may reflect adaptation to challenges related to climate and nutrition. Comparative analyses with domesticated indicine (Bos indicus) and taurine (Bos taurus) cattle revealed genomic signatures of artificial selection, including the expansion of sperm odorant receptor genes in domesticated cattle, which may have important implications for understanding selection for male fertility. CONCLUSIONS: Apart from aiding dissection of economically important traits, the gaur genome will also provide the foundation to conserve the species. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08561-1.
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spelling pubmed-90697362022-05-05 Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle Low, Wai Yee Rosen, Benjamin D. Ren, Yan Bickhart, Derek M. To, Thu-Hien Martin, Fergal J. Billis, Konstantinos Sonstegard, Tad S. Sullivan, Shawn T. Hiendleder, Stefan Williams, John L. Heaton, Michael P. Smith, Timothy P. L. BMC Genomics Research BACKGROUND: The gaur (Bos gaurus) is the largest extant wild bovine species, native to South and Southeast Asia, with unique traits, and is listed as vulnerable by the International Union for Conservation of Nature (IUCN). RESULTS: We report the first gaur reference genome and identify three biological pathways including lysozyme activity, proton transmembrane transporter activity, and oxygen transport with significant changes in gene copy number in gaur compared to other mammals. These may reflect adaptation to challenges related to climate and nutrition. Comparative analyses with domesticated indicine (Bos indicus) and taurine (Bos taurus) cattle revealed genomic signatures of artificial selection, including the expansion of sperm odorant receptor genes in domesticated cattle, which may have important implications for understanding selection for male fertility. CONCLUSIONS: Apart from aiding dissection of economically important traits, the gaur genome will also provide the foundation to conserve the species. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08561-1. BioMed Central 2022-05-04 /pmc/articles/PMC9069736/ /pubmed/35508966 http://dx.doi.org/10.1186/s12864-022-08561-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Low, Wai Yee
Rosen, Benjamin D.
Ren, Yan
Bickhart, Derek M.
To, Thu-Hien
Martin, Fergal J.
Billis, Konstantinos
Sonstegard, Tad S.
Sullivan, Shawn T.
Hiendleder, Stefan
Williams, John L.
Heaton, Michael P.
Smith, Timothy P. L.
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title_full Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title_fullStr Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title_full_unstemmed Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title_short Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
title_sort gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9069736/
https://www.ncbi.nlm.nih.gov/pubmed/35508966
http://dx.doi.org/10.1186/s12864-022-08561-1
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