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Mamba: a systematic software solution for beamline experiments at HEPS
To cater for the diverse experiment requirements at the High Energy Photon Source (HEPS) with often limited human resources, Bluesky was chosen as the basis for our software framework, Mamba. In our attempt to address Bluesky’s lack of integrated graphical user interfaces (GUIs), command injection w...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9070726/ https://www.ncbi.nlm.nih.gov/pubmed/35510999 http://dx.doi.org/10.1107/S1600577522002697 |
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author | Liu, Yu Geng, Yan-Da Bi, Xiao-Xue Li, Xiang Tao, Ye Cao, Jian-She Dong, Yu-Hui Zhang, Yi |
author_facet | Liu, Yu Geng, Yan-Da Bi, Xiao-Xue Li, Xiang Tao, Ye Cao, Jian-She Dong, Yu-Hui Zhang, Yi |
author_sort | Liu, Yu |
collection | PubMed |
description | To cater for the diverse experiment requirements at the High Energy Photon Source (HEPS) with often limited human resources, Bluesky was chosen as the basis for our software framework, Mamba. In our attempt to address Bluesky’s lack of integrated graphical user interfaces (GUIs), command injection with feedback was chosen as the main way for the GUIs to cooperate with the command line interface; a remote-procedure-call service is also provided, which covers functionalities unsuitable for command injection, as well as pushing of status updates. In order to fully support high-frequency applications like fly scans, Bluesky’s support for asynchronous control is being improved; furthermore, to support high-throughput experiments, Mamba Data Worker is being developed to cover the complexity in asynchronous online data processing for these experiments. To systematically simplify the specification of metadata, scan parameters and data-processing graphs for each type of experiment, an experiment parameter generator will be developed; experiment-specific modules to automate preparation steps will also be made. The integration of off-the-shelf code in Mamba for domain-specific needs is under investigation, and Mamba GUI Studio is being developed to simplify the implementation and integration of GUIs. |
format | Online Article Text |
id | pubmed-9070726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-90707262022-05-10 Mamba: a systematic software solution for beamline experiments at HEPS Liu, Yu Geng, Yan-Da Bi, Xiao-Xue Li, Xiang Tao, Ye Cao, Jian-She Dong, Yu-Hui Zhang, Yi J Synchrotron Radiat Research Papers To cater for the diverse experiment requirements at the High Energy Photon Source (HEPS) with often limited human resources, Bluesky was chosen as the basis for our software framework, Mamba. In our attempt to address Bluesky’s lack of integrated graphical user interfaces (GUIs), command injection with feedback was chosen as the main way for the GUIs to cooperate with the command line interface; a remote-procedure-call service is also provided, which covers functionalities unsuitable for command injection, as well as pushing of status updates. In order to fully support high-frequency applications like fly scans, Bluesky’s support for asynchronous control is being improved; furthermore, to support high-throughput experiments, Mamba Data Worker is being developed to cover the complexity in asynchronous online data processing for these experiments. To systematically simplify the specification of metadata, scan parameters and data-processing graphs for each type of experiment, an experiment parameter generator will be developed; experiment-specific modules to automate preparation steps will also be made. The integration of off-the-shelf code in Mamba for domain-specific needs is under investigation, and Mamba GUI Studio is being developed to simplify the implementation and integration of GUIs. International Union of Crystallography 2022-04-05 /pmc/articles/PMC9070726/ /pubmed/35510999 http://dx.doi.org/10.1107/S1600577522002697 Text en © Yu Liu et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Liu, Yu Geng, Yan-Da Bi, Xiao-Xue Li, Xiang Tao, Ye Cao, Jian-She Dong, Yu-Hui Zhang, Yi Mamba: a systematic software solution for beamline experiments at HEPS |
title |
Mamba: a systematic software solution for beamline experiments at HEPS |
title_full |
Mamba: a systematic software solution for beamline experiments at HEPS |
title_fullStr |
Mamba: a systematic software solution for beamline experiments at HEPS |
title_full_unstemmed |
Mamba: a systematic software solution for beamline experiments at HEPS |
title_short |
Mamba: a systematic software solution for beamline experiments at HEPS |
title_sort | mamba: a systematic software solution for beamline experiments at heps |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9070726/ https://www.ncbi.nlm.nih.gov/pubmed/35510999 http://dx.doi.org/10.1107/S1600577522002697 |
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