Cargando…

Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study

It is known from previous literature that type II Spinal Muscular Atrophy (SMA) patients generally, after the age of 5 years, presents a steep deterioration until puberty followed by a relative stability, as most abilities have been lost. Although it is possible to identify points of slope indicatin...

Descripción completa

Detalles Bibliográficos
Autores principales: Coratti, Giorgia, Lenkowicz, Jacopo, Patarnello, Stefano, Gullì, Consolato, Pera, Maria Carmela, Masciocchi, Carlotta, Rinaldi, Riccardo, Lovato, Valeria, Leone, Antonio, Cesario, Alfredo, Mercuri, Eugenio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9070873/
https://www.ncbi.nlm.nih.gov/pubmed/35511762
http://dx.doi.org/10.1371/journal.pone.0267930
_version_ 1784700724901314560
author Coratti, Giorgia
Lenkowicz, Jacopo
Patarnello, Stefano
Gullì, Consolato
Pera, Maria Carmela
Masciocchi, Carlotta
Rinaldi, Riccardo
Lovato, Valeria
Leone, Antonio
Cesario, Alfredo
Mercuri, Eugenio
author_facet Coratti, Giorgia
Lenkowicz, Jacopo
Patarnello, Stefano
Gullì, Consolato
Pera, Maria Carmela
Masciocchi, Carlotta
Rinaldi, Riccardo
Lovato, Valeria
Leone, Antonio
Cesario, Alfredo
Mercuri, Eugenio
author_sort Coratti, Giorgia
collection PubMed
description It is known from previous literature that type II Spinal Muscular Atrophy (SMA) patients generally, after the age of 5 years, presents a steep deterioration until puberty followed by a relative stability, as most abilities have been lost. Although it is possible to identify points of slope indicating early improvement, steep decline and relative stabilizations, there is still a lot of variability within each age group and it’s not always possible to predict individual trajectories of progression from age only. The aim of the study was to develop a predictive model based on machine learning using an XGBoost algorithm for regression and report, explore and quantify, in a single centre longitudinal natural history study, the influence of clinical variables on the 6/12-months Hammersmith Motor Functional Scale Expanded score prediction (HFMSE). This study represents the first approach to artificial intelligence and trained models for the prediction of individualized trajectories of HFMSE disease progression using individual characteristics of the patient. The application of this method to larger cohorts may allow to identify different classes of progression, a crucial information at the time of the new commercially available therapies.
format Online
Article
Text
id pubmed-9070873
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-90708732022-05-06 Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study Coratti, Giorgia Lenkowicz, Jacopo Patarnello, Stefano Gullì, Consolato Pera, Maria Carmela Masciocchi, Carlotta Rinaldi, Riccardo Lovato, Valeria Leone, Antonio Cesario, Alfredo Mercuri, Eugenio PLoS One Research Article It is known from previous literature that type II Spinal Muscular Atrophy (SMA) patients generally, after the age of 5 years, presents a steep deterioration until puberty followed by a relative stability, as most abilities have been lost. Although it is possible to identify points of slope indicating early improvement, steep decline and relative stabilizations, there is still a lot of variability within each age group and it’s not always possible to predict individual trajectories of progression from age only. The aim of the study was to develop a predictive model based on machine learning using an XGBoost algorithm for regression and report, explore and quantify, in a single centre longitudinal natural history study, the influence of clinical variables on the 6/12-months Hammersmith Motor Functional Scale Expanded score prediction (HFMSE). This study represents the first approach to artificial intelligence and trained models for the prediction of individualized trajectories of HFMSE disease progression using individual characteristics of the patient. The application of this method to larger cohorts may allow to identify different classes of progression, a crucial information at the time of the new commercially available therapies. Public Library of Science 2022-05-05 /pmc/articles/PMC9070873/ /pubmed/35511762 http://dx.doi.org/10.1371/journal.pone.0267930 Text en © 2022 Coratti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Coratti, Giorgia
Lenkowicz, Jacopo
Patarnello, Stefano
Gullì, Consolato
Pera, Maria Carmela
Masciocchi, Carlotta
Rinaldi, Riccardo
Lovato, Valeria
Leone, Antonio
Cesario, Alfredo
Mercuri, Eugenio
Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title_full Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title_fullStr Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title_full_unstemmed Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title_short Predictive models in SMA II natural history trajectories using machine learning: A proof of concept study
title_sort predictive models in sma ii natural history trajectories using machine learning: a proof of concept study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9070873/
https://www.ncbi.nlm.nih.gov/pubmed/35511762
http://dx.doi.org/10.1371/journal.pone.0267930
work_keys_str_mv AT corattigiorgia predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT lenkowiczjacopo predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT patarnellostefano predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT gulliconsolato predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT peramariacarmela predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT masciocchicarlotta predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT rinaldiriccardo predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT lovatovaleria predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT leoneantonio predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT cesarioalfredo predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy
AT mercurieugenio predictivemodelsinsmaiinaturalhistorytrajectoriesusingmachinelearningaproofofconceptstudy