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A collection of forcefield precursors for metal–organic frameworks
A host of important performance properties for metal–organic frameworks (MOFs) and other complex materials can be calculated by modeling statistical ensembles. The principle challenge is to develop accurate and computationally efficient interaction models for these simulations. Two major approaches...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9075174/ https://www.ncbi.nlm.nih.gov/pubmed/35539031 http://dx.doi.org/10.1039/c9ra07327b |
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author | Chen, Taoyi Manz, Thomas A. |
author_facet | Chen, Taoyi Manz, Thomas A. |
author_sort | Chen, Taoyi |
collection | PubMed |
description | A host of important performance properties for metal–organic frameworks (MOFs) and other complex materials can be calculated by modeling statistical ensembles. The principle challenge is to develop accurate and computationally efficient interaction models for these simulations. Two major approaches are (i) ab initio molecular dynamics in which the interaction model is provided by an exchange–correlation theory (e.g., DFT + dispersion functional) and (ii) molecular mechanics in which the interaction model is a parameterized classical force field. The first approach requires further development to improve computational speed. The second approach requires further development to automate accurate forcefield parameterization. Because of the extreme chemical diversity across thousands of MOF structures, this problem is still mostly unsolved today. For example, here we show structures in the 2014 CoRE MOF database contain more than 8 thousand different atom types based on first and second neighbors. Our results showed that atom types based on both first and second neighbors adequately capture the chemical environment, but atom types based on only first neighbors do not. For 3056 MOFs, we used density functional theory (DFT) followed by DDEC6 atomic population analysis to extract a host of important forcefield precursors: partial atomic charges; atom-in-material (AIM) C(6), C(8), and C(10) dispersion coefficients; AIM dipole and quadrupole moments; various AIM polarizabilities; quantum Drude oscillator parameters; AIM electron cloud parameters; etc. Electrostatic parameters were validated through comparisons to the DFT-computed electrostatic potential. These forcefield precursors should find widespread applications to developing MOF force fields. |
format | Online Article Text |
id | pubmed-9075174 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90751742022-05-09 A collection of forcefield precursors for metal–organic frameworks Chen, Taoyi Manz, Thomas A. RSC Adv Chemistry A host of important performance properties for metal–organic frameworks (MOFs) and other complex materials can be calculated by modeling statistical ensembles. The principle challenge is to develop accurate and computationally efficient interaction models for these simulations. Two major approaches are (i) ab initio molecular dynamics in which the interaction model is provided by an exchange–correlation theory (e.g., DFT + dispersion functional) and (ii) molecular mechanics in which the interaction model is a parameterized classical force field. The first approach requires further development to improve computational speed. The second approach requires further development to automate accurate forcefield parameterization. Because of the extreme chemical diversity across thousands of MOF structures, this problem is still mostly unsolved today. For example, here we show structures in the 2014 CoRE MOF database contain more than 8 thousand different atom types based on first and second neighbors. Our results showed that atom types based on both first and second neighbors adequately capture the chemical environment, but atom types based on only first neighbors do not. For 3056 MOFs, we used density functional theory (DFT) followed by DDEC6 atomic population analysis to extract a host of important forcefield precursors: partial atomic charges; atom-in-material (AIM) C(6), C(8), and C(10) dispersion coefficients; AIM dipole and quadrupole moments; various AIM polarizabilities; quantum Drude oscillator parameters; AIM electron cloud parameters; etc. Electrostatic parameters were validated through comparisons to the DFT-computed electrostatic potential. These forcefield precursors should find widespread applications to developing MOF force fields. The Royal Society of Chemistry 2019-11-13 /pmc/articles/PMC9075174/ /pubmed/35539031 http://dx.doi.org/10.1039/c9ra07327b Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Chen, Taoyi Manz, Thomas A. A collection of forcefield precursors for metal–organic frameworks |
title | A collection of forcefield precursors for metal–organic frameworks |
title_full | A collection of forcefield precursors for metal–organic frameworks |
title_fullStr | A collection of forcefield precursors for metal–organic frameworks |
title_full_unstemmed | A collection of forcefield precursors for metal–organic frameworks |
title_short | A collection of forcefield precursors for metal–organic frameworks |
title_sort | collection of forcefield precursors for metal–organic frameworks |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9075174/ https://www.ncbi.nlm.nih.gov/pubmed/35539031 http://dx.doi.org/10.1039/c9ra07327b |
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