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Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke

BACKGROUND: Conventional prognostic scores usually require predefined clinical variables to predict outcome. The advancement of natural language processing has made it feasible to derive meaning from unstructured data. We aimed to test whether using unstructured text in electronic health records can...

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Autores principales: Sung, Sheng‐Feng, Chen, Chih‐Hao, Pan, Ru‐Chiou, Hu, Ya‐Han, Jeng, Jiann‐Shing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9075227/
https://www.ncbi.nlm.nih.gov/pubmed/34796719
http://dx.doi.org/10.1161/JAHA.121.023486
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author Sung, Sheng‐Feng
Chen, Chih‐Hao
Pan, Ru‐Chiou
Hu, Ya‐Han
Jeng, Jiann‐Shing
author_facet Sung, Sheng‐Feng
Chen, Chih‐Hao
Pan, Ru‐Chiou
Hu, Ya‐Han
Jeng, Jiann‐Shing
author_sort Sung, Sheng‐Feng
collection PubMed
description BACKGROUND: Conventional prognostic scores usually require predefined clinical variables to predict outcome. The advancement of natural language processing has made it feasible to derive meaning from unstructured data. We aimed to test whether using unstructured text in electronic health records can improve the prediction of functional outcome after acute ischemic stroke. METHODS AND RESULTS: Patients hospitalized for acute ischemic stroke were identified from 2 hospital stroke registries (3847 and 2668 patients, respectively). Prediction models developed using the first cohort were externally validated using the second cohort, and vice versa. Free text in the history of present illness and computed tomography reports was used to build machine learning models using natural language processing to predict poor functional outcome at 90 days poststroke. Four conventional prognostic models were used as baseline models. The area under the receiver operating characteristic curves of the model using history of present illness in the internal and external validation sets were 0.820 and 0.792, respectively, which were comparable to the National Institutes of Health Stroke Scale score (0.811 and 0.807). The model using computed tomography reports achieved area under the receiver operating characteristic curves of 0.758 and 0.658. Adding information from clinical text significantly improved the predictive performance of each baseline model in terms of area under the receiver operating characteristic curves, net reclassification improvement, and integrated discrimination improvement indices (all P<0.001). Swapping the study cohorts led to similar results. CONCLUSIONS: By using natural language processing, unstructured text in electronic health records can provide an alternative tool for stroke prognostication, and even enhance the performance of existing prognostic scores.
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spelling pubmed-90752272022-05-10 Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke Sung, Sheng‐Feng Chen, Chih‐Hao Pan, Ru‐Chiou Hu, Ya‐Han Jeng, Jiann‐Shing J Am Heart Assoc Original Research BACKGROUND: Conventional prognostic scores usually require predefined clinical variables to predict outcome. The advancement of natural language processing has made it feasible to derive meaning from unstructured data. We aimed to test whether using unstructured text in electronic health records can improve the prediction of functional outcome after acute ischemic stroke. METHODS AND RESULTS: Patients hospitalized for acute ischemic stroke were identified from 2 hospital stroke registries (3847 and 2668 patients, respectively). Prediction models developed using the first cohort were externally validated using the second cohort, and vice versa. Free text in the history of present illness and computed tomography reports was used to build machine learning models using natural language processing to predict poor functional outcome at 90 days poststroke. Four conventional prognostic models were used as baseline models. The area under the receiver operating characteristic curves of the model using history of present illness in the internal and external validation sets were 0.820 and 0.792, respectively, which were comparable to the National Institutes of Health Stroke Scale score (0.811 and 0.807). The model using computed tomography reports achieved area under the receiver operating characteristic curves of 0.758 and 0.658. Adding information from clinical text significantly improved the predictive performance of each baseline model in terms of area under the receiver operating characteristic curves, net reclassification improvement, and integrated discrimination improvement indices (all P<0.001). Swapping the study cohorts led to similar results. CONCLUSIONS: By using natural language processing, unstructured text in electronic health records can provide an alternative tool for stroke prognostication, and even enhance the performance of existing prognostic scores. John Wiley and Sons Inc. 2021-11-19 /pmc/articles/PMC9075227/ /pubmed/34796719 http://dx.doi.org/10.1161/JAHA.121.023486 Text en © 2021 The Authors. Published on behalf of the American Heart Association, Inc., by Wiley. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Research
Sung, Sheng‐Feng
Chen, Chih‐Hao
Pan, Ru‐Chiou
Hu, Ya‐Han
Jeng, Jiann‐Shing
Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title_full Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title_fullStr Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title_full_unstemmed Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title_short Natural Language Processing Enhances Prediction of Functional Outcome After Acute Ischemic Stroke
title_sort natural language processing enhances prediction of functional outcome after acute ischemic stroke
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9075227/
https://www.ncbi.nlm.nih.gov/pubmed/34796719
http://dx.doi.org/10.1161/JAHA.121.023486
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