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The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions
The intrinsic dynamic and static nature of G–*–E–*–Y σ(3c–4e) interactions was elucidated with the quantum theory of atoms in molecules dual functional analysis (QTAIM-DFA), employing o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, I, EMe and Me). Asterisks (*)...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9076098/ https://www.ncbi.nlm.nih.gov/pubmed/35540683 http://dx.doi.org/10.1039/c9ra09022c |
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author | Hayashi, Satoko Nishide, Taro Nakanishi, Waro Sancineto, Luca Santi, Claudio |
author_facet | Hayashi, Satoko Nishide, Taro Nakanishi, Waro Sancineto, Luca Santi, Claudio |
author_sort | Hayashi, Satoko |
collection | PubMed |
description | The intrinsic dynamic and static nature of G–*–E–*–Y σ(3c–4e) interactions was elucidated with the quantum theory of atoms in molecules dual functional analysis (QTAIM-DFA), employing o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, I, EMe and Me). Asterisks (*) are employed to emphasize the existence of bond critical points (BCPs) on the bond paths (BPs), corresponding to the interactions in question. Data from the fully optimized structure correspond to the static nature of interactions. The dynamic nature is called the intrinsic dynamic nature if the perturbed structures are generated using the coordinates derived from the compliance constants. Basis sets of the Sapporo-TZP type with diffusion functions are employed for the heteroatoms at the MP2 level. The noncovalent G–*–E interactions in GEY σ(3c–4e) are predicted to demonstrate van der Waals bonding to CT-TBP (trigonal bipyramidal adduct formation through charge transfer) nature, while the E–*–Y bonds have the covalent nature. Some E–F bonds show strong ionic character when G–*–E is predicted to be stronger than E–*–Y. The contributions of the CT terms to the G–*–E interactions, evaluated with NBO, are discussed in relation to the predicted nature. The E(2) values based on NBO are strongly correlated to the compliance constants for the G–*–E interactions if suitably treated separately. |
format | Online Article Text |
id | pubmed-9076098 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90760982022-05-09 The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions Hayashi, Satoko Nishide, Taro Nakanishi, Waro Sancineto, Luca Santi, Claudio RSC Adv Chemistry The intrinsic dynamic and static nature of G–*–E–*–Y σ(3c–4e) interactions was elucidated with the quantum theory of atoms in molecules dual functional analysis (QTAIM-DFA), employing o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, I, EMe and Me). Asterisks (*) are employed to emphasize the existence of bond critical points (BCPs) on the bond paths (BPs), corresponding to the interactions in question. Data from the fully optimized structure correspond to the static nature of interactions. The dynamic nature is called the intrinsic dynamic nature if the perturbed structures are generated using the coordinates derived from the compliance constants. Basis sets of the Sapporo-TZP type with diffusion functions are employed for the heteroatoms at the MP2 level. The noncovalent G–*–E interactions in GEY σ(3c–4e) are predicted to demonstrate van der Waals bonding to CT-TBP (trigonal bipyramidal adduct formation through charge transfer) nature, while the E–*–Y bonds have the covalent nature. Some E–F bonds show strong ionic character when G–*–E is predicted to be stronger than E–*–Y. The contributions of the CT terms to the G–*–E interactions, evaluated with NBO, are discussed in relation to the predicted nature. The E(2) values based on NBO are strongly correlated to the compliance constants for the G–*–E interactions if suitably treated separately. The Royal Society of Chemistry 2019-11-29 /pmc/articles/PMC9076098/ /pubmed/35540683 http://dx.doi.org/10.1039/c9ra09022c Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Hayashi, Satoko Nishide, Taro Nakanishi, Waro Sancineto, Luca Santi, Claudio The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title | The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title_full | The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title_fullStr | The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title_full_unstemmed | The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title_short | The nature of G⋯E–Y σ(3c–4e) in o-Me(n)GCH(2)C(6)H(4)EY (Me(n)G = Me(2)N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions |
title_sort | nature of g⋯e–y σ(3c–4e) in o-me(n)gch(2)c(6)h(4)ey (me(n)g = me(2)n and mee; e = o, s, se and te; y = f, cl, br, eme and me) with contributions from ct and compliance constants in noncovalent g⋯e interactions |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9076098/ https://www.ncbi.nlm.nih.gov/pubmed/35540683 http://dx.doi.org/10.1039/c9ra09022c |
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