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PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes
The molecular weight and isoelectric point of the proteins are very important parameters that control their subcellular localization and subsequent function. Although the genome sequence data of the plant kingdom improved enormously, the proteomic details have been poorly elaborated. Therefore, we h...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9076895/ https://www.ncbi.nlm.nih.gov/pubmed/35523906 http://dx.doi.org/10.1038/s41598-022-11077-z |
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author | Mohanta, Tapan Kumar Kamran, Muhammad Shahzad Omar, Muhammad Anwar, Waheed Choi, Gyu Sang |
author_facet | Mohanta, Tapan Kumar Kamran, Muhammad Shahzad Omar, Muhammad Anwar, Waheed Choi, Gyu Sang |
author_sort | Mohanta, Tapan Kumar |
collection | PubMed |
description | The molecular weight and isoelectric point of the proteins are very important parameters that control their subcellular localization and subsequent function. Although the genome sequence data of the plant kingdom improved enormously, the proteomic details have been poorly elaborated. Therefore, we have calculated the molecular weight and isoelectric point of the plant proteins and reported them in this database. A database, PlantMWpIDB, containing protein data from 342 plant proteomes was created to provide information on plant proteomes for hypothesis formulation in basic research and for biotechnological applications. The Molecular weight and isoelectric point (pI) are important molecular parameters of proteins that are useful when conducting protein studies involving 2D gel electrophoresis, liquid chromatography-mass spectrometry, and X-ray protein crystallography. PlantMWpIDB provides an easy-to-use and efficient interface for search options and generates a summary of basic protein parameters. The database represents a virtual 2D proteome map of plants, and the molecular weight and pI of a protein can be obtained by searching on the name of a protein, a keyword, or by a list of accession numbers. The PlantMWpIDB database also allows one to query protein sequences. The database can be found in the following link https://plantmwpidb.com/. The individual 2D virtual proteome map of the plant kingdom will enable us to understand the proteome diversity between different species. Further, the molecular weight and isoelectric point of individual proteins can enable us to understand their functional significance in different species. |
format | Online Article Text |
id | pubmed-9076895 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-90768952022-05-08 PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes Mohanta, Tapan Kumar Kamran, Muhammad Shahzad Omar, Muhammad Anwar, Waheed Choi, Gyu Sang Sci Rep Article The molecular weight and isoelectric point of the proteins are very important parameters that control their subcellular localization and subsequent function. Although the genome sequence data of the plant kingdom improved enormously, the proteomic details have been poorly elaborated. Therefore, we have calculated the molecular weight and isoelectric point of the plant proteins and reported them in this database. A database, PlantMWpIDB, containing protein data from 342 plant proteomes was created to provide information on plant proteomes for hypothesis formulation in basic research and for biotechnological applications. The Molecular weight and isoelectric point (pI) are important molecular parameters of proteins that are useful when conducting protein studies involving 2D gel electrophoresis, liquid chromatography-mass spectrometry, and X-ray protein crystallography. PlantMWpIDB provides an easy-to-use and efficient interface for search options and generates a summary of basic protein parameters. The database represents a virtual 2D proteome map of plants, and the molecular weight and pI of a protein can be obtained by searching on the name of a protein, a keyword, or by a list of accession numbers. The PlantMWpIDB database also allows one to query protein sequences. The database can be found in the following link https://plantmwpidb.com/. The individual 2D virtual proteome map of the plant kingdom will enable us to understand the proteome diversity between different species. Further, the molecular weight and isoelectric point of individual proteins can enable us to understand their functional significance in different species. Nature Publishing Group UK 2022-05-06 /pmc/articles/PMC9076895/ /pubmed/35523906 http://dx.doi.org/10.1038/s41598-022-11077-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Mohanta, Tapan Kumar Kamran, Muhammad Shahzad Omar, Muhammad Anwar, Waheed Choi, Gyu Sang PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title | PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title_full | PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title_fullStr | PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title_full_unstemmed | PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title_short | PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes |
title_sort | plantmwpidb: a database for the molecular weight and isoelectric points of the plant proteomes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9076895/ https://www.ncbi.nlm.nih.gov/pubmed/35523906 http://dx.doi.org/10.1038/s41598-022-11077-z |
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