Cargando…

Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads

While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polypr...

Descripción completa

Detalles Bibliográficos
Autores principales: Chetrit, Einat, Sharma, Sabita, Maayan, Uri, Pelah, Maya Georgia, Klausner, Ziv, Popa, Ionel, Berkovich, Ronen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9079174/
https://www.ncbi.nlm.nih.gov/pubmed/35540955
http://dx.doi.org/10.1016/j.crstbi.2022.04.003
_version_ 1784702505676963840
author Chetrit, Einat
Sharma, Sabita
Maayan, Uri
Pelah, Maya Georgia
Klausner, Ziv
Popa, Ionel
Berkovich, Ronen
author_facet Chetrit, Einat
Sharma, Sabita
Maayan, Uri
Pelah, Maya Georgia
Klausner, Ziv
Popa, Ionel
Berkovich, Ronen
author_sort Chetrit, Einat
collection PubMed
description While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polyproteins follows an exponential kinetics as the individual unfolding events exhibit identical and identically distributed (iid) Poisson behavior. However, it was shown that under high loads, the sequential unfolding kinetics displays nonexponential kinetics that alludes to aging by a subdiffusion process. Statistical order analysis of this kinetics indicated that the individual unfolding events are not iid, and cannot be defined as a Poisson (memoryless) process. Based on numerical simulations it was argued that this behavior becomes less pronounced with lowering the load, therefore it is to be expected that polyproteins unfolding under lower forces will follow a Poisson behavior. This expectation serves as the motivation of the current study, in which we investigate the effect of force lowering on the unfolding kinetics of Poly-L(8) under varying loads, specifically high (150, 100 ​pN) and moderate-low (45, 30, 20 ​pN) forces. We found that a hierarchy among the unfolding events still exists even under low loads, again resulting in nonexponential behavior. We observe that analyzing the dwell-time distributions with stretched-exponentials and power laws give rise to different phenomenological trends. Using statistical order analysis, we demonstrated that even under the lowest load, the sequential unfolding cannot be considered as iid, in accord with the power law distribution. Additional free energy analysis revealed the contribution of the unfolded segments elasticity that scales with the force on the overall one-dimensional contour of the energy landscape, but more importantly, it discloses the hierarchy within the activation barriers during sequential unfolding that account for the observed nonexponentiality.
format Online
Article
Text
id pubmed-9079174
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-90791742022-05-09 Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads Chetrit, Einat Sharma, Sabita Maayan, Uri Pelah, Maya Georgia Klausner, Ziv Popa, Ionel Berkovich, Ronen Curr Res Struct Biol Research Article While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polyproteins follows an exponential kinetics as the individual unfolding events exhibit identical and identically distributed (iid) Poisson behavior. However, it was shown that under high loads, the sequential unfolding kinetics displays nonexponential kinetics that alludes to aging by a subdiffusion process. Statistical order analysis of this kinetics indicated that the individual unfolding events are not iid, and cannot be defined as a Poisson (memoryless) process. Based on numerical simulations it was argued that this behavior becomes less pronounced with lowering the load, therefore it is to be expected that polyproteins unfolding under lower forces will follow a Poisson behavior. This expectation serves as the motivation of the current study, in which we investigate the effect of force lowering on the unfolding kinetics of Poly-L(8) under varying loads, specifically high (150, 100 ​pN) and moderate-low (45, 30, 20 ​pN) forces. We found that a hierarchy among the unfolding events still exists even under low loads, again resulting in nonexponential behavior. We observe that analyzing the dwell-time distributions with stretched-exponentials and power laws give rise to different phenomenological trends. Using statistical order analysis, we demonstrated that even under the lowest load, the sequential unfolding cannot be considered as iid, in accord with the power law distribution. Additional free energy analysis revealed the contribution of the unfolded segments elasticity that scales with the force on the overall one-dimensional contour of the energy landscape, but more importantly, it discloses the hierarchy within the activation barriers during sequential unfolding that account for the observed nonexponentiality. Elsevier 2022-04-28 /pmc/articles/PMC9079174/ /pubmed/35540955 http://dx.doi.org/10.1016/j.crstbi.2022.04.003 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Chetrit, Einat
Sharma, Sabita
Maayan, Uri
Pelah, Maya Georgia
Klausner, Ziv
Popa, Ionel
Berkovich, Ronen
Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title_full Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title_fullStr Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title_full_unstemmed Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title_short Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
title_sort nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9079174/
https://www.ncbi.nlm.nih.gov/pubmed/35540955
http://dx.doi.org/10.1016/j.crstbi.2022.04.003
work_keys_str_mv AT chetriteinat nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT sharmasabita nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT maayanuri nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT pelahmayageorgia nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT klausnerziv nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT popaionel nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads
AT berkovichronen nonexponentialkineticscapturedinsequentialunfoldingofpolyproteinsoverarangeofloads