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Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa

BACKGROUND: Mucins are part of the glycoprotein family and the main proteinaceous component of mucus. The sea anemone species, Actinia tenebrosa (Phylum Cnidaria) produce large amounts of mucus, which have not been studied in detail. Furthermore, there has only been limited investigation of mucin ge...

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Detalles Bibliográficos
Autor principal: Haridi, Alaa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9080433/
https://www.ncbi.nlm.nih.gov/pubmed/35539013
http://dx.doi.org/10.7717/peerj.13292
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author Haridi, Alaa
author_facet Haridi, Alaa
author_sort Haridi, Alaa
collection PubMed
description BACKGROUND: Mucins are part of the glycoprotein family and the main proteinaceous component of mucus. The sea anemone species, Actinia tenebrosa (Phylum Cnidaria) produce large amounts of mucus, which have not been studied in detail. Furthermore, there has only been limited investigation of mucin genes in phylum Cnidaria. Therefore, the aim of current study was to identify and analyse the repertoire mucin genes present in A. tenebrosa and range of other sea anemone species to document their diversity in this group. METHODS: To achieve this aim, we undertook transcriptome sequencing, assembly, and annotation to identify mucin genes in A. tenebrosa. RESULTS: The results from this study demonstrated a diverse repertoire of mucin proteins, including mucin1-like, mucin4-like, and a range of mucin-like genes in the range of sea anemone species examined. The domain structure of the identified mucin genes was found to be consistent with the conserved domains found in the homologous proteins of vertebrate species. The discovery of a diverse range of mucin genes in sea anemone species provided a basic reference for future mucin studies in cnidarians and could lead to research into their application in the pharmacological, clinical, and cosmetic industries.
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spelling pubmed-90804332022-05-09 Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa Haridi, Alaa PeerJ Bioinformatics BACKGROUND: Mucins are part of the glycoprotein family and the main proteinaceous component of mucus. The sea anemone species, Actinia tenebrosa (Phylum Cnidaria) produce large amounts of mucus, which have not been studied in detail. Furthermore, there has only been limited investigation of mucin genes in phylum Cnidaria. Therefore, the aim of current study was to identify and analyse the repertoire mucin genes present in A. tenebrosa and range of other sea anemone species to document their diversity in this group. METHODS: To achieve this aim, we undertook transcriptome sequencing, assembly, and annotation to identify mucin genes in A. tenebrosa. RESULTS: The results from this study demonstrated a diverse repertoire of mucin proteins, including mucin1-like, mucin4-like, and a range of mucin-like genes in the range of sea anemone species examined. The domain structure of the identified mucin genes was found to be consistent with the conserved domains found in the homologous proteins of vertebrate species. The discovery of a diverse range of mucin genes in sea anemone species provided a basic reference for future mucin studies in cnidarians and could lead to research into their application in the pharmacological, clinical, and cosmetic industries. PeerJ Inc. 2022-05-05 /pmc/articles/PMC9080433/ /pubmed/35539013 http://dx.doi.org/10.7717/peerj.13292 Text en © 2022 Haridi https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Haridi, Alaa
Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title_full Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title_fullStr Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title_full_unstemmed Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title_short Identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone Actinia tenebrosa
title_sort identification, diversity and domain structure analysis of mucin and mucin-like genes in sea anemone actinia tenebrosa
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9080433/
https://www.ncbi.nlm.nih.gov/pubmed/35539013
http://dx.doi.org/10.7717/peerj.13292
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