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Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities
In the context of the global coronavirus pandemic, different deep learning solutions for infected subject detection using chest X-ray images have been proposed. However, deep learning models usually need large labelled datasets to be effective. Semi-supervised deep learning is an attractive alternat...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9085448/ https://www.ncbi.nlm.nih.gov/pubmed/35573166 http://dx.doi.org/10.1016/j.asoc.2022.108983 |
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author | Calderon-Ramirez, Saul Yang, Shengxiang Elizondo, David Moemeni, Armaghan |
author_facet | Calderon-Ramirez, Saul Yang, Shengxiang Elizondo, David Moemeni, Armaghan |
author_sort | Calderon-Ramirez, Saul |
collection | PubMed |
description | In the context of the global coronavirus pandemic, different deep learning solutions for infected subject detection using chest X-ray images have been proposed. However, deep learning models usually need large labelled datasets to be effective. Semi-supervised deep learning is an attractive alternative, where unlabelled data is leveraged to improve the overall model’s accuracy. However, in real-world usage settings, an unlabelled dataset might present a different distribution than the labelled dataset (i.e. the labelled dataset was sampled from a target clinic and the unlabelled dataset from a source clinic). This results in a distribution mismatch between the unlabelled and labelled datasets. In this work, we assess the impact of the distribution mismatch between the labelled and the unlabelled datasets, for a semi-supervised model trained with chest X-ray images, for COVID-19 detection. Under strong distribution mismatch conditions, we found an accuracy hit of almost 30%, suggesting that the unlabelled dataset distribution has a strong influence in the behaviour of the model. Therefore, we propose a straightforward approach to diminish the impact of such distribution mismatch. Our proposed method uses a density approximation of the feature space. It is built upon the target dataset to filter out the observations in the source unlabelled dataset that might harm the accuracy of the semi-supervised model. It assumes that a small labelled source dataset is available together with a larger source unlabelled dataset. Our proposed method does not require any model training, it is simple and computationally cheap. We compare our proposed method against two popular state of the art out-of-distribution data detectors, which are also cheap and simple to implement. In our tests, our method yielded accuracy gains of up to 32%, when compared to the previous state of the art methods. The good results yielded by our method leads us to argue in favour for a more data-centric approach to improve model’s accuracy. Furthermore, the developed method can be used to measure data effectiveness for semi-supervised deep learning model training. |
format | Online Article Text |
id | pubmed-9085448 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90854482022-05-10 Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities Calderon-Ramirez, Saul Yang, Shengxiang Elizondo, David Moemeni, Armaghan Appl Soft Comput Article In the context of the global coronavirus pandemic, different deep learning solutions for infected subject detection using chest X-ray images have been proposed. However, deep learning models usually need large labelled datasets to be effective. Semi-supervised deep learning is an attractive alternative, where unlabelled data is leveraged to improve the overall model’s accuracy. However, in real-world usage settings, an unlabelled dataset might present a different distribution than the labelled dataset (i.e. the labelled dataset was sampled from a target clinic and the unlabelled dataset from a source clinic). This results in a distribution mismatch between the unlabelled and labelled datasets. In this work, we assess the impact of the distribution mismatch between the labelled and the unlabelled datasets, for a semi-supervised model trained with chest X-ray images, for COVID-19 detection. Under strong distribution mismatch conditions, we found an accuracy hit of almost 30%, suggesting that the unlabelled dataset distribution has a strong influence in the behaviour of the model. Therefore, we propose a straightforward approach to diminish the impact of such distribution mismatch. Our proposed method uses a density approximation of the feature space. It is built upon the target dataset to filter out the observations in the source unlabelled dataset that might harm the accuracy of the semi-supervised model. It assumes that a small labelled source dataset is available together with a larger source unlabelled dataset. Our proposed method does not require any model training, it is simple and computationally cheap. We compare our proposed method against two popular state of the art out-of-distribution data detectors, which are also cheap and simple to implement. In our tests, our method yielded accuracy gains of up to 32%, when compared to the previous state of the art methods. The good results yielded by our method leads us to argue in favour for a more data-centric approach to improve model’s accuracy. Furthermore, the developed method can be used to measure data effectiveness for semi-supervised deep learning model training. Elsevier B.V. 2022-07 2022-05-10 /pmc/articles/PMC9085448/ /pubmed/35573166 http://dx.doi.org/10.1016/j.asoc.2022.108983 Text en © 2022 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Calderon-Ramirez, Saul Yang, Shengxiang Elizondo, David Moemeni, Armaghan Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title | Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title_full | Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title_fullStr | Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title_full_unstemmed | Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title_short | Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities |
title_sort | dealing with distribution mismatch in semi-supervised deep learning for covid-19 detection using chest x-ray images: a novel approach using feature densities |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9085448/ https://www.ncbi.nlm.nih.gov/pubmed/35573166 http://dx.doi.org/10.1016/j.asoc.2022.108983 |
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