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Low-Barrier Hydrogen Bond in Fujikurin A–D: A Computational Study
[Image: see text] The compounds Fujikurin A, B, and D, recently isolated from Fusarium fujikuroi, possess intramolecular low-barrier hydrogen bonds (LBHBs), which are hydrogen bonds with a very low-energy barrier for proton transfer. The isolated compounds have a hydrogen-bonded proton that appears...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9089377/ https://www.ncbi.nlm.nih.gov/pubmed/35559150 http://dx.doi.org/10.1021/acsomega.2c00857 |
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author | Tanaka, Hikaru Kuwahata, Kazuaki Tachikawa, Masanori Udagawa, Taro |
author_facet | Tanaka, Hikaru Kuwahata, Kazuaki Tachikawa, Masanori Udagawa, Taro |
author_sort | Tanaka, Hikaru |
collection | PubMed |
description | [Image: see text] The compounds Fujikurin A, B, and D, recently isolated from Fusarium fujikuroi, possess intramolecular low-barrier hydrogen bonds (LBHBs), which are hydrogen bonds with a very low-energy barrier for proton transfer. The isolated compounds have a hydrogen-bonded proton that appears to rapidly switch between two equilibrium states via a transition state (TS). To understand the characteristics of these intramolecular LBHBs in detail, we performed path integral molecular dynamics (PIMD) simulations, which can consider nuclear quantum effects (NQEs) under a finite temperature. The PIMD simulations predicted that the NQE completely washed out the energy barrier for the proton transfer reaction. Consequently, a single-well shape emerged in the results, along with the effective free-energy potential surface for the hydrogen-bonded proton distribution. Thus, we conclude that the hydrogen-bonded proton in Fujikurin does not in fact transfer between two equilibrium structures but widely delocalizes around the global minimum structure involving the TS region. |
format | Online Article Text |
id | pubmed-9089377 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90893772022-05-11 Low-Barrier Hydrogen Bond in Fujikurin A–D: A Computational Study Tanaka, Hikaru Kuwahata, Kazuaki Tachikawa, Masanori Udagawa, Taro ACS Omega [Image: see text] The compounds Fujikurin A, B, and D, recently isolated from Fusarium fujikuroi, possess intramolecular low-barrier hydrogen bonds (LBHBs), which are hydrogen bonds with a very low-energy barrier for proton transfer. The isolated compounds have a hydrogen-bonded proton that appears to rapidly switch between two equilibrium states via a transition state (TS). To understand the characteristics of these intramolecular LBHBs in detail, we performed path integral molecular dynamics (PIMD) simulations, which can consider nuclear quantum effects (NQEs) under a finite temperature. The PIMD simulations predicted that the NQE completely washed out the energy barrier for the proton transfer reaction. Consequently, a single-well shape emerged in the results, along with the effective free-energy potential surface for the hydrogen-bonded proton distribution. Thus, we conclude that the hydrogen-bonded proton in Fujikurin does not in fact transfer between two equilibrium structures but widely delocalizes around the global minimum structure involving the TS region. American Chemical Society 2022-04-15 /pmc/articles/PMC9089377/ /pubmed/35559150 http://dx.doi.org/10.1021/acsomega.2c00857 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Tanaka, Hikaru Kuwahata, Kazuaki Tachikawa, Masanori Udagawa, Taro Low-Barrier Hydrogen Bond in Fujikurin A–D: A Computational Study |
title | Low-Barrier Hydrogen Bond in Fujikurin A–D:
A Computational Study |
title_full | Low-Barrier Hydrogen Bond in Fujikurin A–D:
A Computational Study |
title_fullStr | Low-Barrier Hydrogen Bond in Fujikurin A–D:
A Computational Study |
title_full_unstemmed | Low-Barrier Hydrogen Bond in Fujikurin A–D:
A Computational Study |
title_short | Low-Barrier Hydrogen Bond in Fujikurin A–D:
A Computational Study |
title_sort | low-barrier hydrogen bond in fujikurin a–d:
a computational study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9089377/ https://www.ncbi.nlm.nih.gov/pubmed/35559150 http://dx.doi.org/10.1021/acsomega.2c00857 |
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