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Proteins’ Evolution upon Point Mutations

[Image: see text] As the reader must be already aware, state-of-the-art protein folding prediction methods have reached a smashing success in their goal of accurately determining the three-dimensional structures of proteins. Yet, a solution to simple problems such as the effects of protein point mut...

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Autor principal: Vila, Jorge A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9089682/
https://www.ncbi.nlm.nih.gov/pubmed/35573218
http://dx.doi.org/10.1021/acsomega.2c01407
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author Vila, Jorge A.
author_facet Vila, Jorge A.
author_sort Vila, Jorge A.
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description [Image: see text] As the reader must be already aware, state-of-the-art protein folding prediction methods have reached a smashing success in their goal of accurately determining the three-dimensional structures of proteins. Yet, a solution to simple problems such as the effects of protein point mutations on their (i) native conformation; (ii) marginal stability; (iii) ensemble of high-energy nativelike conformations; and (iv) metamorphism propensity and, hence, their evolvability, remains as an unsolved problem. As a plausible solution to the latter, some properties of the amide hydrogen-deuterium exchange, a highly sensitive probe of the structure, stability, and folding of proteins, are assessed from a new perspective. The preliminary results indicate that the protein marginal stability change upon point mutations provides the necessary and sufficient information to estimate, through a Boltzmann factor, the evolution of the amide hydrogen exchange protection factors and, consequently, that of the ensemble of folded conformations coexisting with the native state. This work contributes to our general understanding of the effects of point mutations on proteins and may spur significant progress in our efforts to develop methods to determine the appearance of new folds and functions accurately.
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spelling pubmed-90896822022-05-12 Proteins’ Evolution upon Point Mutations Vila, Jorge A. ACS Omega [Image: see text] As the reader must be already aware, state-of-the-art protein folding prediction methods have reached a smashing success in their goal of accurately determining the three-dimensional structures of proteins. Yet, a solution to simple problems such as the effects of protein point mutations on their (i) native conformation; (ii) marginal stability; (iii) ensemble of high-energy nativelike conformations; and (iv) metamorphism propensity and, hence, their evolvability, remains as an unsolved problem. As a plausible solution to the latter, some properties of the amide hydrogen-deuterium exchange, a highly sensitive probe of the structure, stability, and folding of proteins, are assessed from a new perspective. The preliminary results indicate that the protein marginal stability change upon point mutations provides the necessary and sufficient information to estimate, through a Boltzmann factor, the evolution of the amide hydrogen exchange protection factors and, consequently, that of the ensemble of folded conformations coexisting with the native state. This work contributes to our general understanding of the effects of point mutations on proteins and may spur significant progress in our efforts to develop methods to determine the appearance of new folds and functions accurately. American Chemical Society 2022-04-14 /pmc/articles/PMC9089682/ /pubmed/35573218 http://dx.doi.org/10.1021/acsomega.2c01407 Text en © 2022 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Vila, Jorge A.
Proteins’ Evolution upon Point Mutations
title Proteins’ Evolution upon Point Mutations
title_full Proteins’ Evolution upon Point Mutations
title_fullStr Proteins’ Evolution upon Point Mutations
title_full_unstemmed Proteins’ Evolution upon Point Mutations
title_short Proteins’ Evolution upon Point Mutations
title_sort proteins’ evolution upon point mutations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9089682/
https://www.ncbi.nlm.nih.gov/pubmed/35573218
http://dx.doi.org/10.1021/acsomega.2c01407
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