Cargando…
Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China
Diospyros nigra (J.F.Gmel.) M.R.Almeida is a rare tree in the family Ebenaceae. The species is native to South America, while having been introduced to Florida and Texas (USA), India, Java and Madagascar. Additionally, this species is distributed in Guangdong Province and the southwest portion of Ha...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090366/ https://www.ncbi.nlm.nih.gov/pubmed/35558176 http://dx.doi.org/10.1080/23802359.2022.2072243 |
_version_ | 1784704709031886848 |
---|---|
author | Xin-Xin, Xu Wang, Hong-Xin Chen, Da-Juan Ke, Xiu-Rong Zhu, Zhi-Xin Wang, Hua-Feng |
author_facet | Xin-Xin, Xu Wang, Hong-Xin Chen, Da-Juan Ke, Xiu-Rong Zhu, Zhi-Xin Wang, Hua-Feng |
author_sort | Xin-Xin, Xu |
collection | PubMed |
description | Diospyros nigra (J.F.Gmel.) M.R.Almeida is a rare tree in the family Ebenaceae. The species is native to South America, while having been introduced to Florida and Texas (USA), India, Java and Madagascar. Additionally, this species is distributed in Guangdong Province and the southwest portion of Hainan Province, China. Here, we report and characterize the complete plastome of a cultivar of D. nigra. The length of the complete plastome is 157,168 bp, including 131 genes consisting of 84 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The plastome has the typical structure and gene content of angiosperms, including two inverted repeat (IR) regions of 26,095 bp, a large single copy (LSC) region of 86,610 bp and a small single-copy (SSC) region of 18,386 bp. The total G/C content of the plastome in D. nigra is 37.4%. The complete plastome sequence of D. nigra will make contributions to the conservation genetics of the species, as well as to phylogenetic studies in Ebenaceae. |
format | Online Article Text |
id | pubmed-9090366 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-90903662022-05-11 Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China Xin-Xin, Xu Wang, Hong-Xin Chen, Da-Juan Ke, Xiu-Rong Zhu, Zhi-Xin Wang, Hua-Feng Mitochondrial DNA B Resour Plastome Announcement Diospyros nigra (J.F.Gmel.) M.R.Almeida is a rare tree in the family Ebenaceae. The species is native to South America, while having been introduced to Florida and Texas (USA), India, Java and Madagascar. Additionally, this species is distributed in Guangdong Province and the southwest portion of Hainan Province, China. Here, we report and characterize the complete plastome of a cultivar of D. nigra. The length of the complete plastome is 157,168 bp, including 131 genes consisting of 84 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The plastome has the typical structure and gene content of angiosperms, including two inverted repeat (IR) regions of 26,095 bp, a large single copy (LSC) region of 86,610 bp and a small single-copy (SSC) region of 18,386 bp. The total G/C content of the plastome in D. nigra is 37.4%. The complete plastome sequence of D. nigra will make contributions to the conservation genetics of the species, as well as to phylogenetic studies in Ebenaceae. Taylor & Francis 2022-05-09 /pmc/articles/PMC9090366/ /pubmed/35558176 http://dx.doi.org/10.1080/23802359.2022.2072243 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Xin-Xin, Xu Wang, Hong-Xin Chen, Da-Juan Ke, Xiu-Rong Zhu, Zhi-Xin Wang, Hua-Feng Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title | Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title_full | Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title_fullStr | Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title_full_unstemmed | Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title_short | Complete plastome sequence from a cultivar of Diospyros nigra (J.F.Gmel.) M.R. Almeida (Ebenaceae): a nutritious fruit tree with high economic value cultivated in Hainan province, China |
title_sort | complete plastome sequence from a cultivar of diospyros nigra (j.f.gmel.) m.r. almeida (ebenaceae): a nutritious fruit tree with high economic value cultivated in hainan province, china |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090366/ https://www.ncbi.nlm.nih.gov/pubmed/35558176 http://dx.doi.org/10.1080/23802359.2022.2072243 |
work_keys_str_mv | AT xinxinxu completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina AT wanghongxin completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina AT chendajuan completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina AT kexiurong completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina AT zhuzhixin completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina AT wanghuafeng completeplastomesequencefromacultivarofdiospyrosnigrajfgmelmralmeidaebenaceaeanutritiousfruittreewithhigheconomicvaluecultivatedinhainanprovincechina |