Cargando…
Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae)
Machilus salicina Hance, 1885 is a species of flowering plant in the family Lauraceae and is mainly found at low altitudes in southern China. In this study, we assembled and annotated the complete chloroplast genome of M. salicina for the first time. We analyzed the general features of M. salicina a...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090370/ https://www.ncbi.nlm.nih.gov/pubmed/35558181 http://dx.doi.org/10.1080/23802359.2022.2068981 |
_version_ | 1784704709976653824 |
---|---|
author | Xiaoxuan, Long Shi, Wenbo Song, Weicai Han, Weiqi Yang, Guiwen Wang, Shuo |
author_facet | Xiaoxuan, Long Shi, Wenbo Song, Weicai Han, Weiqi Yang, Guiwen Wang, Shuo |
author_sort | Xiaoxuan, Long |
collection | PubMed |
description | Machilus salicina Hance, 1885 is a species of flowering plant in the family Lauraceae and is mainly found at low altitudes in southern China. In this study, we assembled and annotated the complete chloroplast genome of M. salicina for the first time. We analyzed the general features of M. salicina and constructed a phylogenetic tree based on 15 Lauraceae species. The chloroplast genome of M. salicina had a total length of 153,943 bp. The length of a large single copy region, a small single copy region, and two inverted repeat regions were 93,689 bp, 20,070 bp, and 20,092bp, respectively. A total of 128 genes were detected, which included 84 protein-coding genes, 36 tRNAs and 8 rRNAs. The GC content of M. salicina complete chloroplast genome was 39.1%. The phylogenetic tree indicated that M. salicina was closely related to M. yunnanensis. |
format | Online Article Text |
id | pubmed-9090370 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-90903702022-05-11 Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) Xiaoxuan, Long Shi, Wenbo Song, Weicai Han, Weiqi Yang, Guiwen Wang, Shuo Mitochondrial DNA B Resour Plastome Announcement Machilus salicina Hance, 1885 is a species of flowering plant in the family Lauraceae and is mainly found at low altitudes in southern China. In this study, we assembled and annotated the complete chloroplast genome of M. salicina for the first time. We analyzed the general features of M. salicina and constructed a phylogenetic tree based on 15 Lauraceae species. The chloroplast genome of M. salicina had a total length of 153,943 bp. The length of a large single copy region, a small single copy region, and two inverted repeat regions were 93,689 bp, 20,070 bp, and 20,092bp, respectively. A total of 128 genes were detected, which included 84 protein-coding genes, 36 tRNAs and 8 rRNAs. The GC content of M. salicina complete chloroplast genome was 39.1%. The phylogenetic tree indicated that M. salicina was closely related to M. yunnanensis. Taylor & Francis 2022-05-04 /pmc/articles/PMC9090370/ /pubmed/35558181 http://dx.doi.org/10.1080/23802359.2022.2068981 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Xiaoxuan, Long Shi, Wenbo Song, Weicai Han, Weiqi Yang, Guiwen Wang, Shuo Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title | Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title_full | Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title_fullStr | Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title_full_unstemmed | Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title_short | Complete chloroplast genome sequence and annotation of Machilus salicina Hance, 1885 (lauraceae) |
title_sort | complete chloroplast genome sequence and annotation of machilus salicina hance, 1885 (lauraceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090370/ https://www.ncbi.nlm.nih.gov/pubmed/35558181 http://dx.doi.org/10.1080/23802359.2022.2068981 |
work_keys_str_mv | AT xiaoxuanlong completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae AT shiwenbo completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae AT songweicai completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae AT hanweiqi completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae AT yangguiwen completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae AT wangshuo completechloroplastgenomesequenceandannotationofmachilussalicinahance1885lauraceae |