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Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae)
Peltoboykinia tellimoides, which is distributed in Japan and China, is the type species of Peltoboykinia. In this study, we sequenced and assembled the complete chloroplast (cp) genome of P. tellimoides and reconstructed the phylogeny of Saxifragaceae based on the whole cp genome sequences. The cp g...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090422/ https://www.ncbi.nlm.nih.gov/pubmed/35558180 http://dx.doi.org/10.1080/23802359.2022.2070040 |
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author | Yang, Ranran Li, Rui Dong, Meifang Liu, Luxian |
author_facet | Yang, Ranran Li, Rui Dong, Meifang Liu, Luxian |
author_sort | Yang, Ranran |
collection | PubMed |
description | Peltoboykinia tellimoides, which is distributed in Japan and China, is the type species of Peltoboykinia. In this study, we sequenced and assembled the complete chloroplast (cp) genome of P. tellimoides and reconstructed the phylogeny of Saxifragaceae based on the whole cp genome sequences. The cp genome of P. tellimoides was 156,274 bp in length, comprising a pair of inverted repeat regions (25,099 bp) separated by a large single copy region (88,109 bp) and a small single copy region (17,967 bp). The genome encoded 112 unique genes consisting of 78 different protein-coding genes, 30 transfer RNA and four ribosomal RNA genes, with 16 duplicated genes in the inverted repeats. Phylogenetic analysis indicated that P. tellimoides together with three Chrysosplenium species formed a high support clade, which was sister to Micranthes melanocentra. |
format | Online Article Text |
id | pubmed-9090422 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-90904222022-05-11 Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) Yang, Ranran Li, Rui Dong, Meifang Liu, Luxian Mitochondrial DNA B Resour Mitogenome Announcement Peltoboykinia tellimoides, which is distributed in Japan and China, is the type species of Peltoboykinia. In this study, we sequenced and assembled the complete chloroplast (cp) genome of P. tellimoides and reconstructed the phylogeny of Saxifragaceae based on the whole cp genome sequences. The cp genome of P. tellimoides was 156,274 bp in length, comprising a pair of inverted repeat regions (25,099 bp) separated by a large single copy region (88,109 bp) and a small single copy region (17,967 bp). The genome encoded 112 unique genes consisting of 78 different protein-coding genes, 30 transfer RNA and four ribosomal RNA genes, with 16 duplicated genes in the inverted repeats. Phylogenetic analysis indicated that P. tellimoides together with three Chrysosplenium species formed a high support clade, which was sister to Micranthes melanocentra. Taylor & Francis 2022-05-03 /pmc/articles/PMC9090422/ /pubmed/35558180 http://dx.doi.org/10.1080/23802359.2022.2070040 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yang, Ranran Li, Rui Dong, Meifang Liu, Luxian Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title | Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title_full | Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title_short | Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae) |
title_sort | characterization of the complete chloroplast genome of peltoboykinia tellimoides (saxifragaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9090422/ https://www.ncbi.nlm.nih.gov/pubmed/35558180 http://dx.doi.org/10.1080/23802359.2022.2070040 |
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