Cargando…

Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1

Na(+)-taurocholate cotransporting polypeptide deficiency (NTCPD) is an autosomal recessive disorder arising from biallelic SLC10A1 mutations. As a newly-described inborn error of bile acid metabolism, the epidemiology of this condition remains largely unclear in Chinese population so far. In this st...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Hua, Chen, Rong, Lin, Gui-Zhi, Lin, Wei-Xia, Yaqub, Muhammad-Rauf, Song, Yuan-Zong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091302/
https://www.ncbi.nlm.nih.gov/pubmed/35571010
http://dx.doi.org/10.3389/fgene.2022.874379
_version_ 1784704889416318976
author Li, Hua
Chen, Rong
Lin, Gui-Zhi
Lin, Wei-Xia
Yaqub, Muhammad-Rauf
Song, Yuan-Zong
author_facet Li, Hua
Chen, Rong
Lin, Gui-Zhi
Lin, Wei-Xia
Yaqub, Muhammad-Rauf
Song, Yuan-Zong
author_sort Li, Hua
collection PubMed
description Na(+)-taurocholate cotransporting polypeptide deficiency (NTCPD) is an autosomal recessive disorder arising from biallelic SLC10A1 mutations. As a newly-described inborn error of bile acid metabolism, the epidemiology of this condition remains largely unclear in Chinese population so far. In this study, a total of 2,828 peripheral blood samples were collected from 12 cities in Guangdong, a province with the largest population in China, and the four prevalent SLC10A1 variants c.800C > T (p.Ser267Phe), c.263T > C (p.Ile88Thr), c.595A > C (p.Ser199Arg) and c.665T > C (p.Leu222Ser) were screened for by using polymerase chain reaction (PCR)- restriction fragment length polymorphism (RFLP). As a result, 663 mutated SLC10A1 alleles were detected, and the mutated allele frequency was calculated to be 11.72% (663/5,656), with a carrier frequency 20.69% (1/5) and a theoretical morbidity rate 1.37% (1/73) of NTCPD in Guangdong province. The variant c.800C > T (p.Ser267Phe) exhibited highest allele frequency among the four prevalent variants (χ(2) = 1501.27, p < 0.0001) as well as higher allele frequency in the peripheral region than that within the Pearl River Delta (χ(2) = 4.834, p < 0.05). The results suggested that NTCPD might be a disorder rather common in Guangdong province. The findings depicted the molecular epidemiologic features of NTCPD, providing preliminary but significant laboratory evidences for the subsequent NTCPD diagnosis and management in Guangdong population.
format Online
Article
Text
id pubmed-9091302
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-90913022022-05-12 Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1 Li, Hua Chen, Rong Lin, Gui-Zhi Lin, Wei-Xia Yaqub, Muhammad-Rauf Song, Yuan-Zong Front Genet Genetics Na(+)-taurocholate cotransporting polypeptide deficiency (NTCPD) is an autosomal recessive disorder arising from biallelic SLC10A1 mutations. As a newly-described inborn error of bile acid metabolism, the epidemiology of this condition remains largely unclear in Chinese population so far. In this study, a total of 2,828 peripheral blood samples were collected from 12 cities in Guangdong, a province with the largest population in China, and the four prevalent SLC10A1 variants c.800C > T (p.Ser267Phe), c.263T > C (p.Ile88Thr), c.595A > C (p.Ser199Arg) and c.665T > C (p.Leu222Ser) were screened for by using polymerase chain reaction (PCR)- restriction fragment length polymorphism (RFLP). As a result, 663 mutated SLC10A1 alleles were detected, and the mutated allele frequency was calculated to be 11.72% (663/5,656), with a carrier frequency 20.69% (1/5) and a theoretical morbidity rate 1.37% (1/73) of NTCPD in Guangdong province. The variant c.800C > T (p.Ser267Phe) exhibited highest allele frequency among the four prevalent variants (χ(2) = 1501.27, p < 0.0001) as well as higher allele frequency in the peripheral region than that within the Pearl River Delta (χ(2) = 4.834, p < 0.05). The results suggested that NTCPD might be a disorder rather common in Guangdong province. The findings depicted the molecular epidemiologic features of NTCPD, providing preliminary but significant laboratory evidences for the subsequent NTCPD diagnosis and management in Guangdong population. Frontiers Media S.A. 2022-04-27 /pmc/articles/PMC9091302/ /pubmed/35571010 http://dx.doi.org/10.3389/fgene.2022.874379 Text en Copyright © 2022 Li, Chen, Lin, Lin, Yaqub and Song. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Li, Hua
Chen, Rong
Lin, Gui-Zhi
Lin, Wei-Xia
Yaqub, Muhammad-Rauf
Song, Yuan-Zong
Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title_full Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title_fullStr Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title_full_unstemmed Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title_short Molecular Epidemiology of Na(+)-Taurocholate Cotransporting Polypeptide Deficiency in Guangdong Province, China: A Pilot Study by Screening for Four Prevalent Variants of the Causative Gene SLC10A1
title_sort molecular epidemiology of na(+)-taurocholate cotransporting polypeptide deficiency in guangdong province, china: a pilot study by screening for four prevalent variants of the causative gene slc10a1
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091302/
https://www.ncbi.nlm.nih.gov/pubmed/35571010
http://dx.doi.org/10.3389/fgene.2022.874379
work_keys_str_mv AT lihua molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1
AT chenrong molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1
AT linguizhi molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1
AT linweixia molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1
AT yaqubmuhammadrauf molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1
AT songyuanzong molecularepidemiologyofnataurocholatecotransportingpolypeptidedeficiencyinguangdongprovincechinaapilotstudybyscreeningforfourprevalentvariantsofthecausativegeneslc10a1