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A Prognostic Gene Signature for Hepatocellular Carcinoma
Hepatocellular carcinoma is the third most common cause of cancer-related deaths in China and immune-based therapy can improve patient outcomes. In this study, we investigated the relationship between immunity-associated genes and hepatocellular carcinoma from the prognostic perspective. The data do...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091376/ https://www.ncbi.nlm.nih.gov/pubmed/35574316 http://dx.doi.org/10.3389/fonc.2022.841530 |
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author | Chen, Rong Zhao, Meng An, Yanli Liu, Dongfang Tang, Qiusha Teng, Gaojun |
author_facet | Chen, Rong Zhao, Meng An, Yanli Liu, Dongfang Tang, Qiusha Teng, Gaojun |
author_sort | Chen, Rong |
collection | PubMed |
description | Hepatocellular carcinoma is the third most common cause of cancer-related deaths in China and immune-based therapy can improve patient outcomes. In this study, we investigated the relationship between immunity-associated genes and hepatocellular carcinoma from the prognostic perspective. The data downloaded from The Cancer Genome Atlas Liver Hepatocellular Carcinoma (TCGA-LIHC) and the Gene Expression Omnibus (GEO) was screened for gene mutation frequency using the maftools package. Immunity-associated eight-gene signature with strong prognostic ability was constructed and proved as an independent predictor of the patient outcome in LIHC. Seven genes in the immune-related eight-gene signature were strongly associated with the infiltration of M0 macrophages, resting mast cells, and regulatory T cells. Our research may provide clinicians with a quantitative method to predict the prognosis of patients with liver cancer, which can assist in the selection of the optimal treatment plan. |
format | Online Article Text |
id | pubmed-9091376 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90913762022-05-12 A Prognostic Gene Signature for Hepatocellular Carcinoma Chen, Rong Zhao, Meng An, Yanli Liu, Dongfang Tang, Qiusha Teng, Gaojun Front Oncol Oncology Hepatocellular carcinoma is the third most common cause of cancer-related deaths in China and immune-based therapy can improve patient outcomes. In this study, we investigated the relationship between immunity-associated genes and hepatocellular carcinoma from the prognostic perspective. The data downloaded from The Cancer Genome Atlas Liver Hepatocellular Carcinoma (TCGA-LIHC) and the Gene Expression Omnibus (GEO) was screened for gene mutation frequency using the maftools package. Immunity-associated eight-gene signature with strong prognostic ability was constructed and proved as an independent predictor of the patient outcome in LIHC. Seven genes in the immune-related eight-gene signature were strongly associated with the infiltration of M0 macrophages, resting mast cells, and regulatory T cells. Our research may provide clinicians with a quantitative method to predict the prognosis of patients with liver cancer, which can assist in the selection of the optimal treatment plan. Frontiers Media S.A. 2022-04-27 /pmc/articles/PMC9091376/ /pubmed/35574316 http://dx.doi.org/10.3389/fonc.2022.841530 Text en Copyright © 2022 Chen, Zhao, An, Liu, Tang and Teng https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Chen, Rong Zhao, Meng An, Yanli Liu, Dongfang Tang, Qiusha Teng, Gaojun A Prognostic Gene Signature for Hepatocellular Carcinoma |
title | A Prognostic Gene Signature for Hepatocellular Carcinoma |
title_full | A Prognostic Gene Signature for Hepatocellular Carcinoma |
title_fullStr | A Prognostic Gene Signature for Hepatocellular Carcinoma |
title_full_unstemmed | A Prognostic Gene Signature for Hepatocellular Carcinoma |
title_short | A Prognostic Gene Signature for Hepatocellular Carcinoma |
title_sort | prognostic gene signature for hepatocellular carcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091376/ https://www.ncbi.nlm.nih.gov/pubmed/35574316 http://dx.doi.org/10.3389/fonc.2022.841530 |
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