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Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091505/ https://www.ncbi.nlm.nih.gov/pubmed/35571180 http://dx.doi.org/10.3389/fcvm.2022.865096 |
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author | Zheng, Youyang Liu, Zaoqu Yang, Xinyue Weng, Siyuan Xu, Hui Guo, Chunguang Xing, Zhe Liu, Long Wang, Libo Dang, Qin Qiu, Chunguang |
author_facet | Zheng, Youyang Liu, Zaoqu Yang, Xinyue Weng, Siyuan Xu, Hui Guo, Chunguang Xing, Zhe Liu, Long Wang, Libo Dang, Qin Qiu, Chunguang |
author_sort | Zheng, Youyang |
collection | PubMed |
description | BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from five independent cohorts were enrolled. The Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to identify the key modules associated with DCM. The latent mechanisms and protein-protein interaction network underlying the key modules were further revealed. Subsequently, we developed and validated a LASSO diagnostic model in five independent cohorts. RESULTS: Two key modules were identified using WGCNA. Novel mechanisms related to the extracellular, mitochondrial matrix or IL-17 signaling pathway were pinpointed, which might significantly influence DCM. Besides, 23 key genes were screened out by combining WGCNA and differential expression analysis. Based on the key genes, a genetic diagnosis model was constructed and validated using five cohorts with excellent AUCs (0.975, 0.954, 0.722, 0.850, 0.988). Finally, significant differences in immune infiltration were observed between the two groups divided by the diagnostic model. CONCLUSION: Our study revealed several novel pathways and key genes to provide potential targets and biomarkers for DCM treatment. A key genes’ diagnosis model was built to offer a new tool for diagnosing DCM. |
format | Online Article Text |
id | pubmed-9091505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90915052022-05-12 Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy Zheng, Youyang Liu, Zaoqu Yang, Xinyue Weng, Siyuan Xu, Hui Guo, Chunguang Xing, Zhe Liu, Long Wang, Libo Dang, Qin Qiu, Chunguang Front Cardiovasc Med Cardiovascular Medicine BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from five independent cohorts were enrolled. The Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to identify the key modules associated with DCM. The latent mechanisms and protein-protein interaction network underlying the key modules were further revealed. Subsequently, we developed and validated a LASSO diagnostic model in five independent cohorts. RESULTS: Two key modules were identified using WGCNA. Novel mechanisms related to the extracellular, mitochondrial matrix or IL-17 signaling pathway were pinpointed, which might significantly influence DCM. Besides, 23 key genes were screened out by combining WGCNA and differential expression analysis. Based on the key genes, a genetic diagnosis model was constructed and validated using five cohorts with excellent AUCs (0.975, 0.954, 0.722, 0.850, 0.988). Finally, significant differences in immune infiltration were observed between the two groups divided by the diagnostic model. CONCLUSION: Our study revealed several novel pathways and key genes to provide potential targets and biomarkers for DCM treatment. A key genes’ diagnosis model was built to offer a new tool for diagnosing DCM. Frontiers Media S.A. 2022-04-27 /pmc/articles/PMC9091505/ /pubmed/35571180 http://dx.doi.org/10.3389/fcvm.2022.865096 Text en Copyright © 2022 Zheng, Liu, Yang, Weng, Xu, Guo, Xing, Liu, Wang, Dang and Qiu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Zheng, Youyang Liu, Zaoqu Yang, Xinyue Weng, Siyuan Xu, Hui Guo, Chunguang Xing, Zhe Liu, Long Wang, Libo Dang, Qin Qiu, Chunguang Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title | Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title_full | Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title_fullStr | Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title_full_unstemmed | Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title_short | Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy |
title_sort | exploring key genes to construct a diagnosis model of dilated cardiomyopathy |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091505/ https://www.ncbi.nlm.nih.gov/pubmed/35571180 http://dx.doi.org/10.3389/fcvm.2022.865096 |
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