Cargando…

Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy

BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Youyang, Liu, Zaoqu, Yang, Xinyue, Weng, Siyuan, Xu, Hui, Guo, Chunguang, Xing, Zhe, Liu, Long, Wang, Libo, Dang, Qin, Qiu, Chunguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091505/
https://www.ncbi.nlm.nih.gov/pubmed/35571180
http://dx.doi.org/10.3389/fcvm.2022.865096
_version_ 1784704939568660480
author Zheng, Youyang
Liu, Zaoqu
Yang, Xinyue
Weng, Siyuan
Xu, Hui
Guo, Chunguang
Xing, Zhe
Liu, Long
Wang, Libo
Dang, Qin
Qiu, Chunguang
author_facet Zheng, Youyang
Liu, Zaoqu
Yang, Xinyue
Weng, Siyuan
Xu, Hui
Guo, Chunguang
Xing, Zhe
Liu, Long
Wang, Libo
Dang, Qin
Qiu, Chunguang
author_sort Zheng, Youyang
collection PubMed
description BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from five independent cohorts were enrolled. The Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to identify the key modules associated with DCM. The latent mechanisms and protein-protein interaction network underlying the key modules were further revealed. Subsequently, we developed and validated a LASSO diagnostic model in five independent cohorts. RESULTS: Two key modules were identified using WGCNA. Novel mechanisms related to the extracellular, mitochondrial matrix or IL-17 signaling pathway were pinpointed, which might significantly influence DCM. Besides, 23 key genes were screened out by combining WGCNA and differential expression analysis. Based on the key genes, a genetic diagnosis model was constructed and validated using five cohorts with excellent AUCs (0.975, 0.954, 0.722, 0.850, 0.988). Finally, significant differences in immune infiltration were observed between the two groups divided by the diagnostic model. CONCLUSION: Our study revealed several novel pathways and key genes to provide potential targets and biomarkers for DCM treatment. A key genes’ diagnosis model was built to offer a new tool for diagnosing DCM.
format Online
Article
Text
id pubmed-9091505
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-90915052022-05-12 Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy Zheng, Youyang Liu, Zaoqu Yang, Xinyue Weng, Siyuan Xu, Hui Guo, Chunguang Xing, Zhe Liu, Long Wang, Libo Dang, Qin Qiu, Chunguang Front Cardiovasc Med Cardiovascular Medicine BACKGROUND: Dilated cardiomyopathy (DCM) is characterized by left ventricular dilatation and systolic dysfunction. The pathogenesis and etiologies of DCM remain elusive. This study aims to identify the key genes to construct a genetic diagnosis model of DCM. METHODS: A total of 257 DCM samples from five independent cohorts were enrolled. The Weighted Gene Co-Expression Network Analysis (WGCNA) was performed to identify the key modules associated with DCM. The latent mechanisms and protein-protein interaction network underlying the key modules were further revealed. Subsequently, we developed and validated a LASSO diagnostic model in five independent cohorts. RESULTS: Two key modules were identified using WGCNA. Novel mechanisms related to the extracellular, mitochondrial matrix or IL-17 signaling pathway were pinpointed, which might significantly influence DCM. Besides, 23 key genes were screened out by combining WGCNA and differential expression analysis. Based on the key genes, a genetic diagnosis model was constructed and validated using five cohorts with excellent AUCs (0.975, 0.954, 0.722, 0.850, 0.988). Finally, significant differences in immune infiltration were observed between the two groups divided by the diagnostic model. CONCLUSION: Our study revealed several novel pathways and key genes to provide potential targets and biomarkers for DCM treatment. A key genes’ diagnosis model was built to offer a new tool for diagnosing DCM. Frontiers Media S.A. 2022-04-27 /pmc/articles/PMC9091505/ /pubmed/35571180 http://dx.doi.org/10.3389/fcvm.2022.865096 Text en Copyright © 2022 Zheng, Liu, Yang, Weng, Xu, Guo, Xing, Liu, Wang, Dang and Qiu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cardiovascular Medicine
Zheng, Youyang
Liu, Zaoqu
Yang, Xinyue
Weng, Siyuan
Xu, Hui
Guo, Chunguang
Xing, Zhe
Liu, Long
Wang, Libo
Dang, Qin
Qiu, Chunguang
Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title_full Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title_fullStr Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title_full_unstemmed Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title_short Exploring Key Genes to Construct a Diagnosis Model of Dilated Cardiomyopathy
title_sort exploring key genes to construct a diagnosis model of dilated cardiomyopathy
topic Cardiovascular Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9091505/
https://www.ncbi.nlm.nih.gov/pubmed/35571180
http://dx.doi.org/10.3389/fcvm.2022.865096
work_keys_str_mv AT zhengyouyang exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT liuzaoqu exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT yangxinyue exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT wengsiyuan exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT xuhui exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT guochunguang exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT xingzhe exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT liulong exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT wanglibo exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT dangqin exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy
AT qiuchunguang exploringkeygenestoconstructadiagnosismodelofdilatedcardiomyopathy