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eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain

Integrative drug safety research in translational health informatics has rapidly evolved and included data that are drawn in from many resources, combining diverse data that are either reused from (curated) repositories, or newly generated at source. Each resource is mandated by different sets of me...

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Autores principales: Sarntivijai, Sirarat, Blomberg, Niklas, Lauer, Katharina B., Briggs, Katharine, Steger-Hartmann, Thomas, van der Lei, Johan, Sauer, John-Michael, Liwski, Richard, Mourby, Miranda, Camprubi, Montse
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9096149/
https://www.ncbi.nlm.nih.gov/pubmed/35602243
http://dx.doi.org/10.12688/f1000research.74024.1
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author Sarntivijai, Sirarat
Blomberg, Niklas
Lauer, Katharina B.
Briggs, Katharine
Steger-Hartmann, Thomas
van der Lei, Johan
Sauer, John-Michael
Liwski, Richard
Mourby, Miranda
Camprubi, Montse
author_facet Sarntivijai, Sirarat
Blomberg, Niklas
Lauer, Katharina B.
Briggs, Katharine
Steger-Hartmann, Thomas
van der Lei, Johan
Sauer, John-Michael
Liwski, Richard
Mourby, Miranda
Camprubi, Montse
author_sort Sarntivijai, Sirarat
collection PubMed
description Integrative drug safety research in translational health informatics has rapidly evolved and included data that are drawn in from many resources, combining diverse data that are either reused from (curated) repositories, or newly generated at source. Each resource is mandated by different sets of metadata rules that are imposed on the incoming data. Combination of the data cannot be readily achieved without interference of data stewardship and the top-down policy guidelines that supervise and inform the process for data combination to aid meaningful interpretation and analysis of such data. The eTRANSAFE Consortium's effort to drive integrative drug safety research at a large scale hereby present the lessons learnt and the proposal of solution at the guidelines in practice at this Innovative Medicines Initiative (IMI) project. Recommendations in these guidelines were compiled from feedback received from key stakeholders in regulatory agencies, EFPIA companies, and academic partners. The research reproducibility guidelines presented in this study lay the foundation for a comprehensive data sharing and knowledge management plans accounting for research data management in the drug safety space - FAIR data sharing guidelines, and the model verification guidelines as generic deliverables that best practices that can be reused by other scientific community members at large. FAIR data sharing is a dynamic landscape that rapidly evolves with fast-paced technology advancements. The research reproducibility in drug safety guidelines introduced in this study provides a reusable framework that can be adopted by other research communities that aim to integrate public and private data in biomedical research space.
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spelling pubmed-90961492022-05-19 eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain Sarntivijai, Sirarat Blomberg, Niklas Lauer, Katharina B. Briggs, Katharine Steger-Hartmann, Thomas van der Lei, Johan Sauer, John-Michael Liwski, Richard Mourby, Miranda Camprubi, Montse F1000Res Research Article Integrative drug safety research in translational health informatics has rapidly evolved and included data that are drawn in from many resources, combining diverse data that are either reused from (curated) repositories, or newly generated at source. Each resource is mandated by different sets of metadata rules that are imposed on the incoming data. Combination of the data cannot be readily achieved without interference of data stewardship and the top-down policy guidelines that supervise and inform the process for data combination to aid meaningful interpretation and analysis of such data. The eTRANSAFE Consortium's effort to drive integrative drug safety research at a large scale hereby present the lessons learnt and the proposal of solution at the guidelines in practice at this Innovative Medicines Initiative (IMI) project. Recommendations in these guidelines were compiled from feedback received from key stakeholders in regulatory agencies, EFPIA companies, and academic partners. The research reproducibility guidelines presented in this study lay the foundation for a comprehensive data sharing and knowledge management plans accounting for research data management in the drug safety space - FAIR data sharing guidelines, and the model verification guidelines as generic deliverables that best practices that can be reused by other scientific community members at large. FAIR data sharing is a dynamic landscape that rapidly evolves with fast-paced technology advancements. The research reproducibility in drug safety guidelines introduced in this study provides a reusable framework that can be adopted by other research communities that aim to integrate public and private data in biomedical research space. F1000 Research Limited 2022-03-07 /pmc/articles/PMC9096149/ /pubmed/35602243 http://dx.doi.org/10.12688/f1000research.74024.1 Text en Copyright: © 2022 Sarntivijai S et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Sarntivijai, Sirarat
Blomberg, Niklas
Lauer, Katharina B.
Briggs, Katharine
Steger-Hartmann, Thomas
van der Lei, Johan
Sauer, John-Michael
Liwski, Richard
Mourby, Miranda
Camprubi, Montse
eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title_full eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title_fullStr eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title_full_unstemmed eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title_short eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain
title_sort etransafe: building a sustainable framework to share reproducible drug safety knowledge with the public domain
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9096149/
https://www.ncbi.nlm.nih.gov/pubmed/35602243
http://dx.doi.org/10.12688/f1000research.74024.1
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