Cargando…
Stochastic Model of Solvent Exchange in the First Coordination Shell of Aqua Ions
[Image: see text] Ion microsolvation is a basic, yet fundamental, process of ionic solutions underlying many relevant phenomena in either biological or nanotechnological applications, such as solvent reorganization energy, ion transport, catalytic activity, and so on. As a consequence, it is a topic...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097284/ https://www.ncbi.nlm.nih.gov/pubmed/35471007 http://dx.doi.org/10.1021/acs.jctc.2c00181 |
_version_ | 1784706146213298176 |
---|---|
author | Sagresti, Luca Peri, Lorenzo Ceccarelli, Giacomo Brancato, Giuseppe |
author_facet | Sagresti, Luca Peri, Lorenzo Ceccarelli, Giacomo Brancato, Giuseppe |
author_sort | Sagresti, Luca |
collection | PubMed |
description | [Image: see text] Ion microsolvation is a basic, yet fundamental, process of ionic solutions underlying many relevant phenomena in either biological or nanotechnological applications, such as solvent reorganization energy, ion transport, catalytic activity, and so on. As a consequence, it is a topic of extensive investigations by various experimental techniques, ranging from X-ray diffraction to NMR relaxation and from calorimetry to vibrational spectroscopy, and theoretical approaches, especially those based on molecular dynamics (MD) simulations. The conventional microscopic view of ion solvation is usually provided by a “static” cluster model representing the first ion–solvent coordination shell. Despite the merits of such a simple model, however, ion coordination in solution should be better regarded as a complex population of dynamically interchanging molecular configurations. Such a more comprehensive view is more subtle to characterize and often elusive to standard approaches. In this work, we report on an effective computational strategy aiming at providing a detailed picture of solvent coordination and exchange around aqua ions, thus including the main structural, thermodynamic, and dynamic properties of ion microsolvation, such as the most probable first-shell complex structures, the corresponding free energies, the interchanging energy barriers, and the solvent-exchange rates. Assuming the solvent coordination number as an effective reaction coordinate and combining MD simulations with enhanced sampling and master-equation approaches, we propose a stochastic model suitable for properly describing, at the same time, the thermodynamics and kinetics of ion–water coordination. The model is successfully tested toward various divalent ions (Ca(2+), Zn(2+), Hg(2+), and Cd(2+)) in aqueous solution, considering also the case of a high ionic concentration. Results show a very good agreement with those issuing from brute-force MD simulations, when available, and support the reliable prediction of rare ion–water complexes and slow water exchange rates not easily accessible to usual computational methods. |
format | Online Article Text |
id | pubmed-9097284 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90972842022-05-13 Stochastic Model of Solvent Exchange in the First Coordination Shell of Aqua Ions Sagresti, Luca Peri, Lorenzo Ceccarelli, Giacomo Brancato, Giuseppe J Chem Theory Comput [Image: see text] Ion microsolvation is a basic, yet fundamental, process of ionic solutions underlying many relevant phenomena in either biological or nanotechnological applications, such as solvent reorganization energy, ion transport, catalytic activity, and so on. As a consequence, it is a topic of extensive investigations by various experimental techniques, ranging from X-ray diffraction to NMR relaxation and from calorimetry to vibrational spectroscopy, and theoretical approaches, especially those based on molecular dynamics (MD) simulations. The conventional microscopic view of ion solvation is usually provided by a “static” cluster model representing the first ion–solvent coordination shell. Despite the merits of such a simple model, however, ion coordination in solution should be better regarded as a complex population of dynamically interchanging molecular configurations. Such a more comprehensive view is more subtle to characterize and often elusive to standard approaches. In this work, we report on an effective computational strategy aiming at providing a detailed picture of solvent coordination and exchange around aqua ions, thus including the main structural, thermodynamic, and dynamic properties of ion microsolvation, such as the most probable first-shell complex structures, the corresponding free energies, the interchanging energy barriers, and the solvent-exchange rates. Assuming the solvent coordination number as an effective reaction coordinate and combining MD simulations with enhanced sampling and master-equation approaches, we propose a stochastic model suitable for properly describing, at the same time, the thermodynamics and kinetics of ion–water coordination. The model is successfully tested toward various divalent ions (Ca(2+), Zn(2+), Hg(2+), and Cd(2+)) in aqueous solution, considering also the case of a high ionic concentration. Results show a very good agreement with those issuing from brute-force MD simulations, when available, and support the reliable prediction of rare ion–water complexes and slow water exchange rates not easily accessible to usual computational methods. American Chemical Society 2022-04-26 2022-05-10 /pmc/articles/PMC9097284/ /pubmed/35471007 http://dx.doi.org/10.1021/acs.jctc.2c00181 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Sagresti, Luca Peri, Lorenzo Ceccarelli, Giacomo Brancato, Giuseppe Stochastic Model of Solvent Exchange in the First Coordination Shell of Aqua Ions |
title | Stochastic Model of Solvent Exchange in the First
Coordination Shell of Aqua Ions |
title_full | Stochastic Model of Solvent Exchange in the First
Coordination Shell of Aqua Ions |
title_fullStr | Stochastic Model of Solvent Exchange in the First
Coordination Shell of Aqua Ions |
title_full_unstemmed | Stochastic Model of Solvent Exchange in the First
Coordination Shell of Aqua Ions |
title_short | Stochastic Model of Solvent Exchange in the First
Coordination Shell of Aqua Ions |
title_sort | stochastic model of solvent exchange in the first
coordination shell of aqua ions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097284/ https://www.ncbi.nlm.nih.gov/pubmed/35471007 http://dx.doi.org/10.1021/acs.jctc.2c00181 |
work_keys_str_mv | AT sagrestiluca stochasticmodelofsolventexchangeinthefirstcoordinationshellofaquaions AT perilorenzo stochasticmodelofsolventexchangeinthefirstcoordinationshellofaquaions AT ceccarelligiacomo stochasticmodelofsolventexchangeinthefirstcoordinationshellofaquaions AT brancatogiuseppe stochasticmodelofsolventexchangeinthefirstcoordinationshellofaquaions |