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Bending Modulus of Lipid Membranes from Density Correlation Functions
[Image: see text] The bending modulus κ quantifies the elasticity of biological membranes in terms of the free energy cost of increasing the membrane corrugation. Molecular dynamics (MD) simulations provide a powerful approach to quantify κ by analyzing the thermal fluctuations of the lipid bilayer....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097289/ https://www.ncbi.nlm.nih.gov/pubmed/35389648 http://dx.doi.org/10.1021/acs.jctc.2c00099 |
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author | Hernández-Muñoz, Jose Bresme, Fernando Tarazona, Pedro Chacón, Enrique |
author_facet | Hernández-Muñoz, Jose Bresme, Fernando Tarazona, Pedro Chacón, Enrique |
author_sort | Hernández-Muñoz, Jose |
collection | PubMed |
description | [Image: see text] The bending modulus κ quantifies the elasticity of biological membranes in terms of the free energy cost of increasing the membrane corrugation. Molecular dynamics (MD) simulations provide a powerful approach to quantify κ by analyzing the thermal fluctuations of the lipid bilayer. However, existing methods require the identification and filtering of non-mesoscopic fluctuation modes. State of the art methods rely on identifying a smooth surface to describe the membrane shape. These methods introduce uncertainties in calculating κ since they rely on different criteria to select the relevant fluctuation modes. Here, we present a method to compute κ using molecular simulations. Our approach circumvents the need to define a mesoscopic surface or an orientation field for the lipid tails explicitly. The bending and tilt moduli can be extracted from the analysis of the density correlation function (DCF). The method introduced here builds on the Bedeaux and Weeks (BW) theory for the DCF of fluctuating interfaces and on the coupled undulatory (CU) mode introduced by us in previous work. We test the BW-DCF method by computing the elastic properties of lipid membranes with different system sizes (from 500 to 6000 lipid molecules) and using coarse-grained (for POPC and DPPC lipids) and fully atomistic models (for DPPC). Further, we quantify the impact of cholesterol on the bending modulus of DPPC bilayers. We compare our results with bending moduli obtained with X-ray diffraction data and different computer simulation methods. |
format | Online Article Text |
id | pubmed-9097289 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90972892022-05-13 Bending Modulus of Lipid Membranes from Density Correlation Functions Hernández-Muñoz, Jose Bresme, Fernando Tarazona, Pedro Chacón, Enrique J Chem Theory Comput [Image: see text] The bending modulus κ quantifies the elasticity of biological membranes in terms of the free energy cost of increasing the membrane corrugation. Molecular dynamics (MD) simulations provide a powerful approach to quantify κ by analyzing the thermal fluctuations of the lipid bilayer. However, existing methods require the identification and filtering of non-mesoscopic fluctuation modes. State of the art methods rely on identifying a smooth surface to describe the membrane shape. These methods introduce uncertainties in calculating κ since they rely on different criteria to select the relevant fluctuation modes. Here, we present a method to compute κ using molecular simulations. Our approach circumvents the need to define a mesoscopic surface or an orientation field for the lipid tails explicitly. The bending and tilt moduli can be extracted from the analysis of the density correlation function (DCF). The method introduced here builds on the Bedeaux and Weeks (BW) theory for the DCF of fluctuating interfaces and on the coupled undulatory (CU) mode introduced by us in previous work. We test the BW-DCF method by computing the elastic properties of lipid membranes with different system sizes (from 500 to 6000 lipid molecules) and using coarse-grained (for POPC and DPPC lipids) and fully atomistic models (for DPPC). Further, we quantify the impact of cholesterol on the bending modulus of DPPC bilayers. We compare our results with bending moduli obtained with X-ray diffraction data and different computer simulation methods. American Chemical Society 2022-04-07 2022-05-10 /pmc/articles/PMC9097289/ /pubmed/35389648 http://dx.doi.org/10.1021/acs.jctc.2c00099 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Hernández-Muñoz, Jose Bresme, Fernando Tarazona, Pedro Chacón, Enrique Bending Modulus of Lipid Membranes from Density Correlation Functions |
title | Bending Modulus of Lipid Membranes from Density Correlation
Functions |
title_full | Bending Modulus of Lipid Membranes from Density Correlation
Functions |
title_fullStr | Bending Modulus of Lipid Membranes from Density Correlation
Functions |
title_full_unstemmed | Bending Modulus of Lipid Membranes from Density Correlation
Functions |
title_short | Bending Modulus of Lipid Membranes from Density Correlation
Functions |
title_sort | bending modulus of lipid membranes from density correlation
functions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097289/ https://www.ncbi.nlm.nih.gov/pubmed/35389648 http://dx.doi.org/10.1021/acs.jctc.2c00099 |
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