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Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews

OBJECTIVES: To produce a systematic review (SR), reviewers typically screen thousands of titles and abstracts of articles manually to find a small number which are read in full text to find relevant articles included in the final SR. Here, we evaluate a proposed automated probabilistic publication t...

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Autores principales: Schneider, Jodi, Hoang, Linh, Kansara, Yogeshwar, Cohen, Aaron M, Smalheiser, Neil R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097760/
https://www.ncbi.nlm.nih.gov/pubmed/35571360
http://dx.doi.org/10.1093/jamiaopen/ooac015
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author Schneider, Jodi
Hoang, Linh
Kansara, Yogeshwar
Cohen, Aaron M
Smalheiser, Neil R
author_facet Schneider, Jodi
Hoang, Linh
Kansara, Yogeshwar
Cohen, Aaron M
Smalheiser, Neil R
author_sort Schneider, Jodi
collection PubMed
description OBJECTIVES: To produce a systematic review (SR), reviewers typically screen thousands of titles and abstracts of articles manually to find a small number which are read in full text to find relevant articles included in the final SR. Here, we evaluate a proposed automated probabilistic publication type screening strategy applied to the randomized controlled trial (RCT) articles (i.e., those which present clinical outcome results of RCT studies) included in a corpus of previously published Cochrane reviews. MATERIALS AND METHODS: We selected a random subset of 558 published Cochrane reviews that specified RCT study only inclusion criteria, containing 7113 included articles which could be matched to PubMed identifiers. These were processed by our automated RCT Tagger tool to estimate the probability that each article reports clinical outcomes of a RCT. RESULTS: Removing articles with low predictive scores P < 0.01 eliminated 288 included articles, of which only 22 were actually typical RCT articles, and only 18 were actually typical RCT articles that MEDLINE indexed as such. Based on our sample set, this screening strategy led to fewer than 0.05 relevant RCT articles being missed on average per Cochrane SR. DISCUSSION: This scenario, based on real SRs, demonstrates that automated tagging can identify RCT articles accurately while maintaining very high recall. However, we also found that even SRs whose inclusion criteria are restricted to RCT studies include not only clinical outcome articles per se, but a variety of ancillary article types as well. CONCLUSIONS: This encourages further studies learning how best to incorporate automated tagging of additional publication types into SR triage workflows.
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spelling pubmed-90977602022-05-13 Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews Schneider, Jodi Hoang, Linh Kansara, Yogeshwar Cohen, Aaron M Smalheiser, Neil R JAMIA Open Research and Applications OBJECTIVES: To produce a systematic review (SR), reviewers typically screen thousands of titles and abstracts of articles manually to find a small number which are read in full text to find relevant articles included in the final SR. Here, we evaluate a proposed automated probabilistic publication type screening strategy applied to the randomized controlled trial (RCT) articles (i.e., those which present clinical outcome results of RCT studies) included in a corpus of previously published Cochrane reviews. MATERIALS AND METHODS: We selected a random subset of 558 published Cochrane reviews that specified RCT study only inclusion criteria, containing 7113 included articles which could be matched to PubMed identifiers. These were processed by our automated RCT Tagger tool to estimate the probability that each article reports clinical outcomes of a RCT. RESULTS: Removing articles with low predictive scores P < 0.01 eliminated 288 included articles, of which only 22 were actually typical RCT articles, and only 18 were actually typical RCT articles that MEDLINE indexed as such. Based on our sample set, this screening strategy led to fewer than 0.05 relevant RCT articles being missed on average per Cochrane SR. DISCUSSION: This scenario, based on real SRs, demonstrates that automated tagging can identify RCT articles accurately while maintaining very high recall. However, we also found that even SRs whose inclusion criteria are restricted to RCT studies include not only clinical outcome articles per se, but a variety of ancillary article types as well. CONCLUSIONS: This encourages further studies learning how best to incorporate automated tagging of additional publication types into SR triage workflows. Oxford University Press 2022-03-30 /pmc/articles/PMC9097760/ /pubmed/35571360 http://dx.doi.org/10.1093/jamiaopen/ooac015 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research and Applications
Schneider, Jodi
Hoang, Linh
Kansara, Yogeshwar
Cohen, Aaron M
Smalheiser, Neil R
Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title_full Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title_fullStr Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title_full_unstemmed Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title_short Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
title_sort evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews
topic Research and Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9097760/
https://www.ncbi.nlm.nih.gov/pubmed/35571360
http://dx.doi.org/10.1093/jamiaopen/ooac015
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