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Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5)...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098097/ https://www.ncbi.nlm.nih.gov/pubmed/35551276 http://dx.doi.org/10.1371/journal.pone.0268329 |
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author | Lugtu, Eiron John Ramos, Denise Bernadette Agpalza, Alliah Jen Cabral, Erika Antoinette Carandang, Rian Paolo Dee, Jennica Elia Martinez, Angelica Jose, Julius Eleazar Santillan, Abegail Bangaoil, Ruth Albano, Pia Marie Tomas, Rock Christian |
author_facet | Lugtu, Eiron John Ramos, Denise Bernadette Agpalza, Alliah Jen Cabral, Erika Antoinette Carandang, Rian Paolo Dee, Jennica Elia Martinez, Angelica Jose, Julius Eleazar Santillan, Abegail Bangaoil, Ruth Albano, Pia Marie Tomas, Rock Christian |
author_sort | Lugtu, Eiron John |
collection | PubMed |
description | Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5) artificial neural network (NN) models that can discriminate malignant from benign samples based on infrared spectral data of lung tumors (n = 122; 56 malignant, 66 benign). NNs were benchmarked with classical machine learning (CML) models. Stratified 10-fold cross-validation was performed to evaluate the NN models, and the performance metrics—area under the curve (AUC), accuracy (ACC) positive predictive value (PPV), negative predictive value (NPV), specificity rate (SR), and recall rate (RR)—were averaged for comparison. All NNs were able to outperform the CML models, however, support vector machine is relatively comparable to NNs. Among the NNs, CNN performed best with an AUC of 92.28% ± 7.36%, ACC of 98.45% ± 1.72%, PPV of 96.62% ± 2.30%, NPV of 90.50% ± 11.92%, SR of 96.01% ± 3.09%, and RR of 89.21% ± 12.93%. In conclusion, NNs can be potentially used as a computational tool in lung cancer diagnosis based on infrared spectroscopy of lung tissues. |
format | Online Article Text |
id | pubmed-9098097 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-90980972022-05-13 Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy Lugtu, Eiron John Ramos, Denise Bernadette Agpalza, Alliah Jen Cabral, Erika Antoinette Carandang, Rian Paolo Dee, Jennica Elia Martinez, Angelica Jose, Julius Eleazar Santillan, Abegail Bangaoil, Ruth Albano, Pia Marie Tomas, Rock Christian PLoS One Research Article Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5) artificial neural network (NN) models that can discriminate malignant from benign samples based on infrared spectral data of lung tumors (n = 122; 56 malignant, 66 benign). NNs were benchmarked with classical machine learning (CML) models. Stratified 10-fold cross-validation was performed to evaluate the NN models, and the performance metrics—area under the curve (AUC), accuracy (ACC) positive predictive value (PPV), negative predictive value (NPV), specificity rate (SR), and recall rate (RR)—were averaged for comparison. All NNs were able to outperform the CML models, however, support vector machine is relatively comparable to NNs. Among the NNs, CNN performed best with an AUC of 92.28% ± 7.36%, ACC of 98.45% ± 1.72%, PPV of 96.62% ± 2.30%, NPV of 90.50% ± 11.92%, SR of 96.01% ± 3.09%, and RR of 89.21% ± 12.93%. In conclusion, NNs can be potentially used as a computational tool in lung cancer diagnosis based on infrared spectroscopy of lung tissues. Public Library of Science 2022-05-12 /pmc/articles/PMC9098097/ /pubmed/35551276 http://dx.doi.org/10.1371/journal.pone.0268329 Text en © 2022 Lugtu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lugtu, Eiron John Ramos, Denise Bernadette Agpalza, Alliah Jen Cabral, Erika Antoinette Carandang, Rian Paolo Dee, Jennica Elia Martinez, Angelica Jose, Julius Eleazar Santillan, Abegail Bangaoil, Ruth Albano, Pia Marie Tomas, Rock Christian Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title | Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title_full | Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title_fullStr | Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title_full_unstemmed | Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title_short | Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
title_sort | artificial neural network in the discrimination of lung cancer based on infrared spectroscopy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098097/ https://www.ncbi.nlm.nih.gov/pubmed/35551276 http://dx.doi.org/10.1371/journal.pone.0268329 |
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