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Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy

Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5)...

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Autores principales: Lugtu, Eiron John, Ramos, Denise Bernadette, Agpalza, Alliah Jen, Cabral, Erika Antoinette, Carandang, Rian Paolo, Dee, Jennica Elia, Martinez, Angelica, Jose, Julius Eleazar, Santillan, Abegail, Bangaoil, Ruth, Albano, Pia Marie, Tomas, Rock Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098097/
https://www.ncbi.nlm.nih.gov/pubmed/35551276
http://dx.doi.org/10.1371/journal.pone.0268329
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author Lugtu, Eiron John
Ramos, Denise Bernadette
Agpalza, Alliah Jen
Cabral, Erika Antoinette
Carandang, Rian Paolo
Dee, Jennica Elia
Martinez, Angelica
Jose, Julius Eleazar
Santillan, Abegail
Bangaoil, Ruth
Albano, Pia Marie
Tomas, Rock Christian
author_facet Lugtu, Eiron John
Ramos, Denise Bernadette
Agpalza, Alliah Jen
Cabral, Erika Antoinette
Carandang, Rian Paolo
Dee, Jennica Elia
Martinez, Angelica
Jose, Julius Eleazar
Santillan, Abegail
Bangaoil, Ruth
Albano, Pia Marie
Tomas, Rock Christian
author_sort Lugtu, Eiron John
collection PubMed
description Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5) artificial neural network (NN) models that can discriminate malignant from benign samples based on infrared spectral data of lung tumors (n = 122; 56 malignant, 66 benign). NNs were benchmarked with classical machine learning (CML) models. Stratified 10-fold cross-validation was performed to evaluate the NN models, and the performance metrics—area under the curve (AUC), accuracy (ACC) positive predictive value (PPV), negative predictive value (NPV), specificity rate (SR), and recall rate (RR)—were averaged for comparison. All NNs were able to outperform the CML models, however, support vector machine is relatively comparable to NNs. Among the NNs, CNN performed best with an AUC of 92.28% ± 7.36%, ACC of 98.45% ± 1.72%, PPV of 96.62% ± 2.30%, NPV of 90.50% ± 11.92%, SR of 96.01% ± 3.09%, and RR of 89.21% ± 12.93%. In conclusion, NNs can be potentially used as a computational tool in lung cancer diagnosis based on infrared spectroscopy of lung tissues.
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spelling pubmed-90980972022-05-13 Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy Lugtu, Eiron John Ramos, Denise Bernadette Agpalza, Alliah Jen Cabral, Erika Antoinette Carandang, Rian Paolo Dee, Jennica Elia Martinez, Angelica Jose, Julius Eleazar Santillan, Abegail Bangaoil, Ruth Albano, Pia Marie Tomas, Rock Christian PLoS One Research Article Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5) artificial neural network (NN) models that can discriminate malignant from benign samples based on infrared spectral data of lung tumors (n = 122; 56 malignant, 66 benign). NNs were benchmarked with classical machine learning (CML) models. Stratified 10-fold cross-validation was performed to evaluate the NN models, and the performance metrics—area under the curve (AUC), accuracy (ACC) positive predictive value (PPV), negative predictive value (NPV), specificity rate (SR), and recall rate (RR)—were averaged for comparison. All NNs were able to outperform the CML models, however, support vector machine is relatively comparable to NNs. Among the NNs, CNN performed best with an AUC of 92.28% ± 7.36%, ACC of 98.45% ± 1.72%, PPV of 96.62% ± 2.30%, NPV of 90.50% ± 11.92%, SR of 96.01% ± 3.09%, and RR of 89.21% ± 12.93%. In conclusion, NNs can be potentially used as a computational tool in lung cancer diagnosis based on infrared spectroscopy of lung tissues. Public Library of Science 2022-05-12 /pmc/articles/PMC9098097/ /pubmed/35551276 http://dx.doi.org/10.1371/journal.pone.0268329 Text en © 2022 Lugtu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lugtu, Eiron John
Ramos, Denise Bernadette
Agpalza, Alliah Jen
Cabral, Erika Antoinette
Carandang, Rian Paolo
Dee, Jennica Elia
Martinez, Angelica
Jose, Julius Eleazar
Santillan, Abegail
Bangaoil, Ruth
Albano, Pia Marie
Tomas, Rock Christian
Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title_full Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title_fullStr Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title_full_unstemmed Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title_short Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
title_sort artificial neural network in the discrimination of lung cancer based on infrared spectroscopy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098097/
https://www.ncbi.nlm.nih.gov/pubmed/35551276
http://dx.doi.org/10.1371/journal.pone.0268329
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