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Constructing Cell-Free Expression Systems for Low-Cost Access

[Image: see text] Cell-free systems for gene expression have gained attention as platforms for the facile study of genetic circuits and as highly effective tools for teaching. Despite recent progress, the technology remains inaccessible for many in low- and middle-income countries due to the expensi...

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Autores principales: Guzman-Chavez, Fernando, Arce, Anibal, Adhikari, Abhinav, Vadhin, Sandra, Pedroza-Garcia, Jose Antonio, Gandini, Chiara, Ajioka, Jim W., Molloy, Jenny, Sanchez-Nieto, Sobeida, Varner, Jeffrey D., Federici, Fernan, Haseloff, Jim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098194/
https://www.ncbi.nlm.nih.gov/pubmed/35259873
http://dx.doi.org/10.1021/acssynbio.1c00342
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author Guzman-Chavez, Fernando
Arce, Anibal
Adhikari, Abhinav
Vadhin, Sandra
Pedroza-Garcia, Jose Antonio
Gandini, Chiara
Ajioka, Jim W.
Molloy, Jenny
Sanchez-Nieto, Sobeida
Varner, Jeffrey D.
Federici, Fernan
Haseloff, Jim
author_facet Guzman-Chavez, Fernando
Arce, Anibal
Adhikari, Abhinav
Vadhin, Sandra
Pedroza-Garcia, Jose Antonio
Gandini, Chiara
Ajioka, Jim W.
Molloy, Jenny
Sanchez-Nieto, Sobeida
Varner, Jeffrey D.
Federici, Fernan
Haseloff, Jim
author_sort Guzman-Chavez, Fernando
collection PubMed
description [Image: see text] Cell-free systems for gene expression have gained attention as platforms for the facile study of genetic circuits and as highly effective tools for teaching. Despite recent progress, the technology remains inaccessible for many in low- and middle-income countries due to the expensive reagents required for its manufacturing, as well as specialized equipment required for distribution and storage. To address these challenges, we deconstructed processes required for cell-free mixture preparation and developed a set of alternative low-cost strategies for easy production and sharing of extracts. First, we explored the stability of cell-free reactions dried through a low-cost device based on silica beads, as an alternative to commercial automated freeze dryers. Second, we report the positive effect of lactose as an additive for increasing protein synthesis in maltodextrin-based cell-free reactions using either circular or linear DNA templates. The modifications were used to produce active amounts of two high-value reagents: the isothermal polymerase Bst and the restriction enzyme BsaI. Third, we demonstrated the endogenous regeneration of nucleoside triphosphates and synthesis of pyruvate in cell-free systems (CFSs) based on phosphoenol pyruvate (PEP) and maltodextrin (MDX). We exploited this novel finding to demonstrate the use of a cell-free mixture completely free of any exogenous nucleotide triphosphates (NTPs) to generate high yields of sfGFP expression. Together, these modifications can produce desiccated extracts that are 203–424-fold cheaper than commercial versions. These improvements will facilitate wider use of CFS for research and education purposes.
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spelling pubmed-90981942022-05-13 Constructing Cell-Free Expression Systems for Low-Cost Access Guzman-Chavez, Fernando Arce, Anibal Adhikari, Abhinav Vadhin, Sandra Pedroza-Garcia, Jose Antonio Gandini, Chiara Ajioka, Jim W. Molloy, Jenny Sanchez-Nieto, Sobeida Varner, Jeffrey D. Federici, Fernan Haseloff, Jim ACS Synth Biol [Image: see text] Cell-free systems for gene expression have gained attention as platforms for the facile study of genetic circuits and as highly effective tools for teaching. Despite recent progress, the technology remains inaccessible for many in low- and middle-income countries due to the expensive reagents required for its manufacturing, as well as specialized equipment required for distribution and storage. To address these challenges, we deconstructed processes required for cell-free mixture preparation and developed a set of alternative low-cost strategies for easy production and sharing of extracts. First, we explored the stability of cell-free reactions dried through a low-cost device based on silica beads, as an alternative to commercial automated freeze dryers. Second, we report the positive effect of lactose as an additive for increasing protein synthesis in maltodextrin-based cell-free reactions using either circular or linear DNA templates. The modifications were used to produce active amounts of two high-value reagents: the isothermal polymerase Bst and the restriction enzyme BsaI. Third, we demonstrated the endogenous regeneration of nucleoside triphosphates and synthesis of pyruvate in cell-free systems (CFSs) based on phosphoenol pyruvate (PEP) and maltodextrin (MDX). We exploited this novel finding to demonstrate the use of a cell-free mixture completely free of any exogenous nucleotide triphosphates (NTPs) to generate high yields of sfGFP expression. Together, these modifications can produce desiccated extracts that are 203–424-fold cheaper than commercial versions. These improvements will facilitate wider use of CFS for research and education purposes. American Chemical Society 2022-03-08 2022-03-18 /pmc/articles/PMC9098194/ /pubmed/35259873 http://dx.doi.org/10.1021/acssynbio.1c00342 Text en © 2022 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Guzman-Chavez, Fernando
Arce, Anibal
Adhikari, Abhinav
Vadhin, Sandra
Pedroza-Garcia, Jose Antonio
Gandini, Chiara
Ajioka, Jim W.
Molloy, Jenny
Sanchez-Nieto, Sobeida
Varner, Jeffrey D.
Federici, Fernan
Haseloff, Jim
Constructing Cell-Free Expression Systems for Low-Cost Access
title Constructing Cell-Free Expression Systems for Low-Cost Access
title_full Constructing Cell-Free Expression Systems for Low-Cost Access
title_fullStr Constructing Cell-Free Expression Systems for Low-Cost Access
title_full_unstemmed Constructing Cell-Free Expression Systems for Low-Cost Access
title_short Constructing Cell-Free Expression Systems for Low-Cost Access
title_sort constructing cell-free expression systems for low-cost access
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9098194/
https://www.ncbi.nlm.nih.gov/pubmed/35259873
http://dx.doi.org/10.1021/acssynbio.1c00342
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