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Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution

Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to fl...

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Autores principales: Dietz, Nicholas, Chan, Yen On, Scaboo, Andrew, Graef, George, Hyten, David, Happ, Mary, Diers, Brian, Lorenz, Aaron, Wang, Dechun, Joshi, Trupti, Bilyeu, Kristin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9100572/
https://www.ncbi.nlm.nih.gov/pubmed/35574141
http://dx.doi.org/10.3389/fpls.2022.889066
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author Dietz, Nicholas
Chan, Yen On
Scaboo, Andrew
Graef, George
Hyten, David
Happ, Mary
Diers, Brian
Lorenz, Aaron
Wang, Dechun
Joshi, Trupti
Bilyeu, Kristin
author_facet Dietz, Nicholas
Chan, Yen On
Scaboo, Andrew
Graef, George
Hyten, David
Happ, Mary
Diers, Brian
Lorenz, Aaron
Wang, Dechun
Joshi, Trupti
Bilyeu, Kristin
author_sort Dietz, Nicholas
collection PubMed
description Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to floral induction in the model organism Arabidopsis thaliana have been described. In this work, putative alleles of a library of soybean orthologs of these Arabidopsis flowering genes were tested for their latitudinal distribution among elite US soybean lines developed in the United States. Furthermore, variants comprising the alleles of genes with significant differences in latitudinal distribution were assessed for amino acid conservation across disparate genera to infer their impact on gene function. From these efforts, several candidate genes from various biological pathways were identified that are likely being exploited toward adaptation of US soybean to various maturity groups.
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spelling pubmed-91005722022-05-14 Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution Dietz, Nicholas Chan, Yen On Scaboo, Andrew Graef, George Hyten, David Happ, Mary Diers, Brian Lorenz, Aaron Wang, Dechun Joshi, Trupti Bilyeu, Kristin Front Plant Sci Plant Science Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to floral induction in the model organism Arabidopsis thaliana have been described. In this work, putative alleles of a library of soybean orthologs of these Arabidopsis flowering genes were tested for their latitudinal distribution among elite US soybean lines developed in the United States. Furthermore, variants comprising the alleles of genes with significant differences in latitudinal distribution were assessed for amino acid conservation across disparate genera to infer their impact on gene function. From these efforts, several candidate genes from various biological pathways were identified that are likely being exploited toward adaptation of US soybean to various maturity groups. Frontiers Media S.A. 2022-04-29 /pmc/articles/PMC9100572/ /pubmed/35574141 http://dx.doi.org/10.3389/fpls.2022.889066 Text en Copyright © 2022 Dietz, Chan, Scaboo, Graef, Hyten, Happ, Diers, Lorenz, Wang, Joshi and Bilyeu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Dietz, Nicholas
Chan, Yen On
Scaboo, Andrew
Graef, George
Hyten, David
Happ, Mary
Diers, Brian
Lorenz, Aaron
Wang, Dechun
Joshi, Trupti
Bilyeu, Kristin
Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title_full Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title_fullStr Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title_full_unstemmed Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title_short Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
title_sort candidate genes modulating reproductive timing in elite us soybean lines identified in soybean alleles of arabidopsis flowering orthologs with divergent latitude distribution
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9100572/
https://www.ncbi.nlm.nih.gov/pubmed/35574141
http://dx.doi.org/10.3389/fpls.2022.889066
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