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Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution
Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to fl...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9100572/ https://www.ncbi.nlm.nih.gov/pubmed/35574141 http://dx.doi.org/10.3389/fpls.2022.889066 |
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author | Dietz, Nicholas Chan, Yen On Scaboo, Andrew Graef, George Hyten, David Happ, Mary Diers, Brian Lorenz, Aaron Wang, Dechun Joshi, Trupti Bilyeu, Kristin |
author_facet | Dietz, Nicholas Chan, Yen On Scaboo, Andrew Graef, George Hyten, David Happ, Mary Diers, Brian Lorenz, Aaron Wang, Dechun Joshi, Trupti Bilyeu, Kristin |
author_sort | Dietz, Nicholas |
collection | PubMed |
description | Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to floral induction in the model organism Arabidopsis thaliana have been described. In this work, putative alleles of a library of soybean orthologs of these Arabidopsis flowering genes were tested for their latitudinal distribution among elite US soybean lines developed in the United States. Furthermore, variants comprising the alleles of genes with significant differences in latitudinal distribution were assessed for amino acid conservation across disparate genera to infer their impact on gene function. From these efforts, several candidate genes from various biological pathways were identified that are likely being exploited toward adaptation of US soybean to various maturity groups. |
format | Online Article Text |
id | pubmed-9100572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91005722022-05-14 Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution Dietz, Nicholas Chan, Yen On Scaboo, Andrew Graef, George Hyten, David Happ, Mary Diers, Brian Lorenz, Aaron Wang, Dechun Joshi, Trupti Bilyeu, Kristin Front Plant Sci Plant Science Adaptation of soybean cultivars to the photoperiod in which they are grown is critical for optimizing plant yield. However, despite its importance, only the major loci conferring variation in flowering time and maturity of US soybean have been isolated. By contrast, over 200 genes contributing to floral induction in the model organism Arabidopsis thaliana have been described. In this work, putative alleles of a library of soybean orthologs of these Arabidopsis flowering genes were tested for their latitudinal distribution among elite US soybean lines developed in the United States. Furthermore, variants comprising the alleles of genes with significant differences in latitudinal distribution were assessed for amino acid conservation across disparate genera to infer their impact on gene function. From these efforts, several candidate genes from various biological pathways were identified that are likely being exploited toward adaptation of US soybean to various maturity groups. Frontiers Media S.A. 2022-04-29 /pmc/articles/PMC9100572/ /pubmed/35574141 http://dx.doi.org/10.3389/fpls.2022.889066 Text en Copyright © 2022 Dietz, Chan, Scaboo, Graef, Hyten, Happ, Diers, Lorenz, Wang, Joshi and Bilyeu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Dietz, Nicholas Chan, Yen On Scaboo, Andrew Graef, George Hyten, David Happ, Mary Diers, Brian Lorenz, Aaron Wang, Dechun Joshi, Trupti Bilyeu, Kristin Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title | Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title_full | Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title_fullStr | Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title_full_unstemmed | Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title_short | Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution |
title_sort | candidate genes modulating reproductive timing in elite us soybean lines identified in soybean alleles of arabidopsis flowering orthologs with divergent latitude distribution |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9100572/ https://www.ncbi.nlm.nih.gov/pubmed/35574141 http://dx.doi.org/10.3389/fpls.2022.889066 |
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