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Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differential...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102505/ https://www.ncbi.nlm.nih.gov/pubmed/35421268 http://dx.doi.org/10.1002/jcla.24377 |
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author | Cheng, Daming Wang, Libing Qu, Fengzhi Yu, Jingkun Tang, Zhaoyuan Liu, Xiaogang |
author_facet | Cheng, Daming Wang, Libing Qu, Fengzhi Yu, Jingkun Tang, Zhaoyuan Liu, Xiaogang |
author_sort | Cheng, Daming |
collection | PubMed |
description | We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differentially expressed genes (DEGs) were obtained through the joint analysis of multi‐chip. Functional and pathway enrichment analyses of DEGs indicated that the enrichment was mainly displayed in biological processes such as nuclear division. Based on TCGA‐LIHC data set, univariate, LASSO, and multivariate Cox regression analyses were conducted on the DEGs. Then, 13 feature genes were screened for the risk model. Also, the hub genes were examined in our collected clinical samples and GEPIA database. The performance of the risk model was validated by Kaplan–Meier survival analysis and receiver operation characteristic (ROC) curves. While its universality was verified in GSE76427 and ICGC (LIRI‐JP) validation cohorts. Besides, through combining patients’ clinical features (age, gender, T staging, and stage) and risk scores, univariate and multivariate Cox regression analyses revealed that the risk score was an effective independent prognostic factor. Finally, a nomogram was implemented for 3‐year and 5‐year overall survival prediction of patients. Our findings aid precision prediction for prognosis of HCC patients. |
format | Online Article Text |
id | pubmed-9102505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91025052022-05-18 Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients Cheng, Daming Wang, Libing Qu, Fengzhi Yu, Jingkun Tang, Zhaoyuan Liu, Xiaogang J Clin Lab Anal Research Articles We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differentially expressed genes (DEGs) were obtained through the joint analysis of multi‐chip. Functional and pathway enrichment analyses of DEGs indicated that the enrichment was mainly displayed in biological processes such as nuclear division. Based on TCGA‐LIHC data set, univariate, LASSO, and multivariate Cox regression analyses were conducted on the DEGs. Then, 13 feature genes were screened for the risk model. Also, the hub genes were examined in our collected clinical samples and GEPIA database. The performance of the risk model was validated by Kaplan–Meier survival analysis and receiver operation characteristic (ROC) curves. While its universality was verified in GSE76427 and ICGC (LIRI‐JP) validation cohorts. Besides, through combining patients’ clinical features (age, gender, T staging, and stage) and risk scores, univariate and multivariate Cox regression analyses revealed that the risk score was an effective independent prognostic factor. Finally, a nomogram was implemented for 3‐year and 5‐year overall survival prediction of patients. Our findings aid precision prediction for prognosis of HCC patients. John Wiley and Sons Inc. 2022-04-14 /pmc/articles/PMC9102505/ /pubmed/35421268 http://dx.doi.org/10.1002/jcla.24377 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Cheng, Daming Wang, Libing Qu, Fengzhi Yu, Jingkun Tang, Zhaoyuan Liu, Xiaogang Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title | Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title_full | Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title_fullStr | Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title_full_unstemmed | Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title_short | Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
title_sort | identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102505/ https://www.ncbi.nlm.nih.gov/pubmed/35421268 http://dx.doi.org/10.1002/jcla.24377 |
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