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Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients

We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differential...

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Autores principales: Cheng, Daming, Wang, Libing, Qu, Fengzhi, Yu, Jingkun, Tang, Zhaoyuan, Liu, Xiaogang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102505/
https://www.ncbi.nlm.nih.gov/pubmed/35421268
http://dx.doi.org/10.1002/jcla.24377
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author Cheng, Daming
Wang, Libing
Qu, Fengzhi
Yu, Jingkun
Tang, Zhaoyuan
Liu, Xiaogang
author_facet Cheng, Daming
Wang, Libing
Qu, Fengzhi
Yu, Jingkun
Tang, Zhaoyuan
Liu, Xiaogang
author_sort Cheng, Daming
collection PubMed
description We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differentially expressed genes (DEGs) were obtained through the joint analysis of multi‐chip. Functional and pathway enrichment analyses of DEGs indicated that the enrichment was mainly displayed in biological processes such as nuclear division. Based on TCGA‐LIHC data set, univariate, LASSO, and multivariate Cox regression analyses were conducted on the DEGs. Then, 13 feature genes were screened for the risk model. Also, the hub genes were examined in our collected clinical samples and GEPIA database. The performance of the risk model was validated by Kaplan–Meier survival analysis and receiver operation characteristic (ROC) curves. While its universality was verified in GSE76427 and ICGC (LIRI‐JP) validation cohorts. Besides, through combining patients’ clinical features (age, gender, T staging, and stage) and risk scores, univariate and multivariate Cox regression analyses revealed that the risk score was an effective independent prognostic factor. Finally, a nomogram was implemented for 3‐year and 5‐year overall survival prediction of patients. Our findings aid precision prediction for prognosis of HCC patients.
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spelling pubmed-91025052022-05-18 Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients Cheng, Daming Wang, Libing Qu, Fengzhi Yu, Jingkun Tang, Zhaoyuan Liu, Xiaogang J Clin Lab Anal Research Articles We attempted to screen out the feature genes associated with the prognosis of hepatocellular carcinoma (HCC) patients through bioinformatics methods, to generate a risk model to predict the survival rate of patients. Gene expression information of HCC was accessed from GEO database, and differentially expressed genes (DEGs) were obtained through the joint analysis of multi‐chip. Functional and pathway enrichment analyses of DEGs indicated that the enrichment was mainly displayed in biological processes such as nuclear division. Based on TCGA‐LIHC data set, univariate, LASSO, and multivariate Cox regression analyses were conducted on the DEGs. Then, 13 feature genes were screened for the risk model. Also, the hub genes were examined in our collected clinical samples and GEPIA database. The performance of the risk model was validated by Kaplan–Meier survival analysis and receiver operation characteristic (ROC) curves. While its universality was verified in GSE76427 and ICGC (LIRI‐JP) validation cohorts. Besides, through combining patients’ clinical features (age, gender, T staging, and stage) and risk scores, univariate and multivariate Cox regression analyses revealed that the risk score was an effective independent prognostic factor. Finally, a nomogram was implemented for 3‐year and 5‐year overall survival prediction of patients. Our findings aid precision prediction for prognosis of HCC patients. John Wiley and Sons Inc. 2022-04-14 /pmc/articles/PMC9102505/ /pubmed/35421268 http://dx.doi.org/10.1002/jcla.24377 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Cheng, Daming
Wang, Libing
Qu, Fengzhi
Yu, Jingkun
Tang, Zhaoyuan
Liu, Xiaogang
Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title_full Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title_fullStr Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title_full_unstemmed Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title_short Identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
title_sort identification and construction of a 13‐gene risk model for prognosis prediction in hepatocellular carcinoma patients
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102505/
https://www.ncbi.nlm.nih.gov/pubmed/35421268
http://dx.doi.org/10.1002/jcla.24377
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