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CFVisual: an interactive desktop platform for drawing gene structure and protein architecture

BACKGROUND: When researchers perform gene family analysis, they often analyze the structural characteristics of the gene, such as the distribution of introns and exons. At the same time, characteristic structural analysis of amino acid sequence is also essential, for example, motif and domain featur...

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Autores principales: Chen, Huilong, Song, Xiaoming, Shang, Qian, Feng, Shuyan, Ge, Weina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102596/
https://www.ncbi.nlm.nih.gov/pubmed/35562653
http://dx.doi.org/10.1186/s12859-022-04707-w
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author Chen, Huilong
Song, Xiaoming
Shang, Qian
Feng, Shuyan
Ge, Weina
author_facet Chen, Huilong
Song, Xiaoming
Shang, Qian
Feng, Shuyan
Ge, Weina
author_sort Chen, Huilong
collection PubMed
description BACKGROUND: When researchers perform gene family analysis, they often analyze the structural characteristics of the gene, such as the distribution of introns and exons. At the same time, characteristic structural analysis of amino acid sequence is also essential, for example, motif and domain features. Researchers often integrate these analyses into one image to dig out more information, but the tools responsible for this integration are lacking. RESULTS: Here, we developed a tool (CFVisual) for drawing gene structure and protein architecture. CFVisual can draw the phylogenetic tree, gene structure, and protein architecture in one picture, and has rich interactive capabilities, which can meet the work needs of researchers. Furthermore, it also supports arbitrary stitching of the above analysis images. It has become a useful helper in gene family analysis. The CFVisual package was implemented in Python and is freely available from https://github.com/ChenHuilong1223/CFVisual/. CONCLUSION: CFVisual has been used by some researchers and cited by some articles. In the future, CFVisual will continue to serve as a good helper for researchers in the study of gene structure and protein architecture.
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spelling pubmed-91025962022-05-14 CFVisual: an interactive desktop platform for drawing gene structure and protein architecture Chen, Huilong Song, Xiaoming Shang, Qian Feng, Shuyan Ge, Weina BMC Bioinformatics Research BACKGROUND: When researchers perform gene family analysis, they often analyze the structural characteristics of the gene, such as the distribution of introns and exons. At the same time, characteristic structural analysis of amino acid sequence is also essential, for example, motif and domain features. Researchers often integrate these analyses into one image to dig out more information, but the tools responsible for this integration are lacking. RESULTS: Here, we developed a tool (CFVisual) for drawing gene structure and protein architecture. CFVisual can draw the phylogenetic tree, gene structure, and protein architecture in one picture, and has rich interactive capabilities, which can meet the work needs of researchers. Furthermore, it also supports arbitrary stitching of the above analysis images. It has become a useful helper in gene family analysis. The CFVisual package was implemented in Python and is freely available from https://github.com/ChenHuilong1223/CFVisual/. CONCLUSION: CFVisual has been used by some researchers and cited by some articles. In the future, CFVisual will continue to serve as a good helper for researchers in the study of gene structure and protein architecture. BioMed Central 2022-05-13 /pmc/articles/PMC9102596/ /pubmed/35562653 http://dx.doi.org/10.1186/s12859-022-04707-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chen, Huilong
Song, Xiaoming
Shang, Qian
Feng, Shuyan
Ge, Weina
CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title_full CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title_fullStr CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title_full_unstemmed CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title_short CFVisual: an interactive desktop platform for drawing gene structure and protein architecture
title_sort cfvisual: an interactive desktop platform for drawing gene structure and protein architecture
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102596/
https://www.ncbi.nlm.nih.gov/pubmed/35562653
http://dx.doi.org/10.1186/s12859-022-04707-w
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