Cargando…
Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102655/ https://www.ncbi.nlm.nih.gov/pubmed/35421267 http://dx.doi.org/10.1002/jcla.24389 |
_version_ | 1784707380251983872 |
---|---|
author | Li, Xing Zhou, Libin Lu, Tefei Zhang, Lei Li, Yanjun Xu, Jianting Yin, Min Long, Huimin |
author_facet | Li, Xing Zhou, Libin Lu, Tefei Zhang, Lei Li, Yanjun Xu, Jianting Yin, Min Long, Huimin |
author_sort | Li, Xing |
collection | PubMed |
description | BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using univariate analysis. The signature was constructed based on this pairs. Finally, analysis and internal validation were performed from several aspects. RESULTS: We identified 60 immune‐ and ferroptosis‐related lncRNA pairs, among which 12 were included in the Cox proportional hazards model. Patients in low‐risk group survived for significantly longer. Survival and riskScore analyses showed that the low‐risk group had a significantly better clinical outcome. ROC curve analysis showed that AUC of OS values were more than 0.75 in the training set and the whole cohort. As assessed using Cox analysis, the riskScore was an independent prognostic predictor in the training, testing set and the whole cohort. The areas under the multi‐index ROC in the training set, the testing set, and the whole cohort were 0.777, 0.692, and 0.748, respectively. High‐risk group was positively associated with most of tumor‐infiltrating immune cells. High‐risk Scores correlated positively with high expression of CD274, but not with PD‐1. Low riskScores correlated positively with high expression levels of the genes ERBB2 and nectin‐4. High‐risk Score was associated with a lower IC50 value for Docetaxel, cisplatin, and Pazopanib, while there was an opposite result for metformin. CONCLUSIONS: The signature constructed by pairing irlncRNAs and frlncRNAs showed a notable clinical predictive value. |
format | Online Article Text |
id | pubmed-9102655 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91026552022-05-18 Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer Li, Xing Zhou, Libin Lu, Tefei Zhang, Lei Li, Yanjun Xu, Jianting Yin, Min Long, Huimin J Clin Lab Anal Research Articles BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using univariate analysis. The signature was constructed based on this pairs. Finally, analysis and internal validation were performed from several aspects. RESULTS: We identified 60 immune‐ and ferroptosis‐related lncRNA pairs, among which 12 were included in the Cox proportional hazards model. Patients in low‐risk group survived for significantly longer. Survival and riskScore analyses showed that the low‐risk group had a significantly better clinical outcome. ROC curve analysis showed that AUC of OS values were more than 0.75 in the training set and the whole cohort. As assessed using Cox analysis, the riskScore was an independent prognostic predictor in the training, testing set and the whole cohort. The areas under the multi‐index ROC in the training set, the testing set, and the whole cohort were 0.777, 0.692, and 0.748, respectively. High‐risk group was positively associated with most of tumor‐infiltrating immune cells. High‐risk Scores correlated positively with high expression of CD274, but not with PD‐1. Low riskScores correlated positively with high expression levels of the genes ERBB2 and nectin‐4. High‐risk Score was associated with a lower IC50 value for Docetaxel, cisplatin, and Pazopanib, while there was an opposite result for metformin. CONCLUSIONS: The signature constructed by pairing irlncRNAs and frlncRNAs showed a notable clinical predictive value. John Wiley and Sons Inc. 2022-04-14 /pmc/articles/PMC9102655/ /pubmed/35421267 http://dx.doi.org/10.1002/jcla.24389 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Li, Xing Zhou, Libin Lu, Tefei Zhang, Lei Li, Yanjun Xu, Jianting Yin, Min Long, Huimin Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title | Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title_full | Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title_fullStr | Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title_full_unstemmed | Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title_short | Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer |
title_sort | constructing an immune‐ and ferroptosis‐related lncrna signature to predict the immune landscape of human bladder cancer |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102655/ https://www.ncbi.nlm.nih.gov/pubmed/35421267 http://dx.doi.org/10.1002/jcla.24389 |
work_keys_str_mv | AT lixing constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT zhoulibin constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT lutefei constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT zhanglei constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT liyanjun constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT xujianting constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT yinmin constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer AT longhuimin constructinganimmuneandferroptosisrelatedlncrnasignaturetopredicttheimmunelandscapeofhumanbladdercancer |