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Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer

BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using...

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Autores principales: Li, Xing, Zhou, Libin, Lu, Tefei, Zhang, Lei, Li, Yanjun, Xu, Jianting, Yin, Min, Long, Huimin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102655/
https://www.ncbi.nlm.nih.gov/pubmed/35421267
http://dx.doi.org/10.1002/jcla.24389
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author Li, Xing
Zhou, Libin
Lu, Tefei
Zhang, Lei
Li, Yanjun
Xu, Jianting
Yin, Min
Long, Huimin
author_facet Li, Xing
Zhou, Libin
Lu, Tefei
Zhang, Lei
Li, Yanjun
Xu, Jianting
Yin, Min
Long, Huimin
author_sort Li, Xing
collection PubMed
description BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using univariate analysis. The signature was constructed based on this pairs. Finally, analysis and internal validation were performed from several aspects. RESULTS: We identified 60 immune‐ and ferroptosis‐related lncRNA pairs, among which 12 were included in the Cox proportional hazards model. Patients in low‐risk group survived for significantly longer. Survival and riskScore analyses showed that the low‐risk group had a significantly better clinical outcome. ROC curve analysis showed that AUC of OS values were more than 0.75 in the training set and the whole cohort. As assessed using Cox analysis, the riskScore was an independent prognostic predictor in the training, testing set and the whole cohort. The areas under the multi‐index ROC in the training set, the testing set, and the whole cohort were 0.777, 0.692, and 0.748, respectively. High‐risk group was positively associated with most of tumor‐infiltrating immune cells. High‐risk Scores correlated positively with high expression of CD274, but not with PD‐1. Low riskScores correlated positively with high expression levels of the genes ERBB2 and nectin‐4. High‐risk Score was associated with a lower IC50 value for Docetaxel, cisplatin, and Pazopanib, while there was an opposite result for metformin. CONCLUSIONS: The signature constructed by pairing irlncRNAs and frlncRNAs showed a notable clinical predictive value.
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spelling pubmed-91026552022-05-18 Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer Li, Xing Zhou, Libin Lu, Tefei Zhang, Lei Li, Yanjun Xu, Jianting Yin, Min Long, Huimin J Clin Lab Anal Research Articles BACKGROUND: LncRNAs play a variety of roles in the tumor microenvironment and cancer immune responses. Determining the significance of bladder cancer (BLCA)‐related genes to predict the prognostic and therapeutic response of BLCA is important. METHODS: IrlncRNA/ frlncRNA pairs were determined using univariate analysis. The signature was constructed based on this pairs. Finally, analysis and internal validation were performed from several aspects. RESULTS: We identified 60 immune‐ and ferroptosis‐related lncRNA pairs, among which 12 were included in the Cox proportional hazards model. Patients in low‐risk group survived for significantly longer. Survival and riskScore analyses showed that the low‐risk group had a significantly better clinical outcome. ROC curve analysis showed that AUC of OS values were more than 0.75 in the training set and the whole cohort. As assessed using Cox analysis, the riskScore was an independent prognostic predictor in the training, testing set and the whole cohort. The areas under the multi‐index ROC in the training set, the testing set, and the whole cohort were 0.777, 0.692, and 0.748, respectively. High‐risk group was positively associated with most of tumor‐infiltrating immune cells. High‐risk Scores correlated positively with high expression of CD274, but not with PD‐1. Low riskScores correlated positively with high expression levels of the genes ERBB2 and nectin‐4. High‐risk Score was associated with a lower IC50 value for Docetaxel, cisplatin, and Pazopanib, while there was an opposite result for metformin. CONCLUSIONS: The signature constructed by pairing irlncRNAs and frlncRNAs showed a notable clinical predictive value. John Wiley and Sons Inc. 2022-04-14 /pmc/articles/PMC9102655/ /pubmed/35421267 http://dx.doi.org/10.1002/jcla.24389 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Li, Xing
Zhou, Libin
Lu, Tefei
Zhang, Lei
Li, Yanjun
Xu, Jianting
Yin, Min
Long, Huimin
Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title_full Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title_fullStr Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title_full_unstemmed Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title_short Constructing an immune‐ and ferroptosis‐related lncRNA signature to predict the immune landscape of human bladder cancer
title_sort constructing an immune‐ and ferroptosis‐related lncrna signature to predict the immune landscape of human bladder cancer
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9102655/
https://www.ncbi.nlm.nih.gov/pubmed/35421267
http://dx.doi.org/10.1002/jcla.24389
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