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A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data

Natural rubber (NR), with its excellent mechanical properties, has been attracting considerable scientific and technological attention. Through molecular dynamics (MD) simulations, the effects of key structural factors on tensile stress at the molecular level can be examined. However, this high-prec...

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Autores principales: Huang, Yongdi, Chen, Qionghai, Zhang, Zhiyu, Gao, Ke, Hu, Anwen, Dong, Yining, Liu, Jun, Cui, Lihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103449/
https://www.ncbi.nlm.nih.gov/pubmed/35567066
http://dx.doi.org/10.3390/polym14091897
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author Huang, Yongdi
Chen, Qionghai
Zhang, Zhiyu
Gao, Ke
Hu, Anwen
Dong, Yining
Liu, Jun
Cui, Lihong
author_facet Huang, Yongdi
Chen, Qionghai
Zhang, Zhiyu
Gao, Ke
Hu, Anwen
Dong, Yining
Liu, Jun
Cui, Lihong
author_sort Huang, Yongdi
collection PubMed
description Natural rubber (NR), with its excellent mechanical properties, has been attracting considerable scientific and technological attention. Through molecular dynamics (MD) simulations, the effects of key structural factors on tensile stress at the molecular level can be examined. However, this high-precision method is computationally inefficient and time-consuming, which limits its application. The combination of machine learning and MD is one of the most promising directions to speed up simulations and ensure the accuracy of results. In this work, a surrogate machine learning method trained with MD data is developed to predict not only the tensile stress of NR but also other mechanical behaviors. We propose a novel idea based on feature processing by combining our previous experience in performing predictions of small samples. The proposed ML method consists of (i) an extreme gradient boosting (XGB) model to predict the tensile stress of NR, and (ii) a data augmentation algorithm based on nearest-neighbor interpolation (NNI) and the synthetic minority oversampling technique (SMOTE) to maximize the use of limited training data. Among the data enhancement algorithms that we design, the NNI algorithm finally achieves the effect of approaching the original data sample distribution by interpolating at the neighborhood of the original sample, and the SMOTE algorithm is used to solve the problem of sample imbalance by interpolating at the clustering boundaries of minority samples. The augmented samples are used to establish the XGB prediction model. Finally, the robustness of the proposed models and their predictive ability are guaranteed by high performance values, which indicate that the obtained regression models have good internal and external predictive capacities.
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spelling pubmed-91034492022-05-14 A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data Huang, Yongdi Chen, Qionghai Zhang, Zhiyu Gao, Ke Hu, Anwen Dong, Yining Liu, Jun Cui, Lihong Polymers (Basel) Article Natural rubber (NR), with its excellent mechanical properties, has been attracting considerable scientific and technological attention. Through molecular dynamics (MD) simulations, the effects of key structural factors on tensile stress at the molecular level can be examined. However, this high-precision method is computationally inefficient and time-consuming, which limits its application. The combination of machine learning and MD is one of the most promising directions to speed up simulations and ensure the accuracy of results. In this work, a surrogate machine learning method trained with MD data is developed to predict not only the tensile stress of NR but also other mechanical behaviors. We propose a novel idea based on feature processing by combining our previous experience in performing predictions of small samples. The proposed ML method consists of (i) an extreme gradient boosting (XGB) model to predict the tensile stress of NR, and (ii) a data augmentation algorithm based on nearest-neighbor interpolation (NNI) and the synthetic minority oversampling technique (SMOTE) to maximize the use of limited training data. Among the data enhancement algorithms that we design, the NNI algorithm finally achieves the effect of approaching the original data sample distribution by interpolating at the neighborhood of the original sample, and the SMOTE algorithm is used to solve the problem of sample imbalance by interpolating at the clustering boundaries of minority samples. The augmented samples are used to establish the XGB prediction model. Finally, the robustness of the proposed models and their predictive ability are guaranteed by high performance values, which indicate that the obtained regression models have good internal and external predictive capacities. MDPI 2022-05-06 /pmc/articles/PMC9103449/ /pubmed/35567066 http://dx.doi.org/10.3390/polym14091897 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Huang, Yongdi
Chen, Qionghai
Zhang, Zhiyu
Gao, Ke
Hu, Anwen
Dong, Yining
Liu, Jun
Cui, Lihong
A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title_full A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title_fullStr A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title_full_unstemmed A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title_short A Machine Learning Framework to Predict the Tensile Stress of Natural Rubber: Based on Molecular Dynamics Simulation Data
title_sort machine learning framework to predict the tensile stress of natural rubber: based on molecular dynamics simulation data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103449/
https://www.ncbi.nlm.nih.gov/pubmed/35567066
http://dx.doi.org/10.3390/polym14091897
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