Cargando…
The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resourc...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103607/ https://www.ncbi.nlm.nih.gov/pubmed/35573603 http://dx.doi.org/10.1080/23802359.2022.2073841 |
_version_ | 1784707596045778944 |
---|---|
author | Liu, Xuehua Yang, Wenli Zhang, Danke Liu, Hao Cui, Yueming Wang, Lei Hu, Hongyu Yin, Yue Zhang, Gangmin |
author_facet | Liu, Xuehua Yang, Wenli Zhang, Danke Liu, Hao Cui, Yueming Wang, Lei Hu, Hongyu Yin, Yue Zhang, Gangmin |
author_sort | Liu, Xuehua |
collection | PubMed |
description | Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resources for future research of this endangered species, the complete chloroplast genome sequence of R. pekinensis was assembled and annotated for the first time. The complete chloroplast genome sequence was 156,139 bp in length, containing a large single copy region (LSC) of 85,430 bp and a small single copy region (SSC) of 19,970 bp, which were separated by a pair of 25,367 bp inverted repeat regions (IRs). The complete chloroplast sequence contained 112 unique genes, including 30 tRNA, 4 rRNA, and 78 protein-coding genes. The overall guanine-cytosine (GC) content of the chloroplast genome was 37.8%, and the GC contents of the LSC, SSC, and IR regions were 36.0%, 31.3%, and 43.5%, respectively. Phylogenetic analysis with the reported chloroplast sequences showed that R. pekinensis was closely related to R. bungei Steud. 1841, both of which belonged to Ranunculus Sect. Batrachium DC. 1817. These data will provide essential resources regarding the evolution and conservation of R. pekinensis. |
format | Online Article Text |
id | pubmed-9103607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-91036072022-05-14 The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China Liu, Xuehua Yang, Wenli Zhang, Danke Liu, Hao Cui, Yueming Wang, Lei Hu, Hongyu Yin, Yue Zhang, Gangmin Mitochondrial DNA B Resour Plastome Announcement Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resources for future research of this endangered species, the complete chloroplast genome sequence of R. pekinensis was assembled and annotated for the first time. The complete chloroplast genome sequence was 156,139 bp in length, containing a large single copy region (LSC) of 85,430 bp and a small single copy region (SSC) of 19,970 bp, which were separated by a pair of 25,367 bp inverted repeat regions (IRs). The complete chloroplast sequence contained 112 unique genes, including 30 tRNA, 4 rRNA, and 78 protein-coding genes. The overall guanine-cytosine (GC) content of the chloroplast genome was 37.8%, and the GC contents of the LSC, SSC, and IR regions were 36.0%, 31.3%, and 43.5%, respectively. Phylogenetic analysis with the reported chloroplast sequences showed that R. pekinensis was closely related to R. bungei Steud. 1841, both of which belonged to Ranunculus Sect. Batrachium DC. 1817. These data will provide essential resources regarding the evolution and conservation of R. pekinensis. Taylor & Francis 2022-05-11 /pmc/articles/PMC9103607/ /pubmed/35573603 http://dx.doi.org/10.1080/23802359.2022.2073841 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Liu, Xuehua Yang, Wenli Zhang, Danke Liu, Hao Cui, Yueming Wang, Lei Hu, Hongyu Yin, Yue Zhang, Gangmin The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title | The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title_full | The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title_fullStr | The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title_full_unstemmed | The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title_short | The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China |
title_sort | complete chloroplast genome sequence of ranunculus pekinensis (l. liou) luferov (ranunculaceae), a species endemic to china |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103607/ https://www.ncbi.nlm.nih.gov/pubmed/35573603 http://dx.doi.org/10.1080/23802359.2022.2073841 |
work_keys_str_mv | AT liuxuehua thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT yangwenli thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT zhangdanke thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT liuhao thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT cuiyueming thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT wanglei thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT huhongyu thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT yinyue thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT zhanggangmin thecompletechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT liuxuehua completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT yangwenli completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT zhangdanke completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT liuhao completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT cuiyueming completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT wanglei completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT huhongyu completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT yinyue completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina AT zhanggangmin completechloroplastgenomesequenceofranunculuspekinensislliouluferovranunculaceaeaspeciesendemictochina |