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The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China

Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resourc...

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Autores principales: Liu, Xuehua, Yang, Wenli, Zhang, Danke, Liu, Hao, Cui, Yueming, Wang, Lei, Hu, Hongyu, Yin, Yue, Zhang, Gangmin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103607/
https://www.ncbi.nlm.nih.gov/pubmed/35573603
http://dx.doi.org/10.1080/23802359.2022.2073841
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author Liu, Xuehua
Yang, Wenli
Zhang, Danke
Liu, Hao
Cui, Yueming
Wang, Lei
Hu, Hongyu
Yin, Yue
Zhang, Gangmin
author_facet Liu, Xuehua
Yang, Wenli
Zhang, Danke
Liu, Hao
Cui, Yueming
Wang, Lei
Hu, Hongyu
Yin, Yue
Zhang, Gangmin
author_sort Liu, Xuehua
collection PubMed
description Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resources for future research of this endangered species, the complete chloroplast genome sequence of R. pekinensis was assembled and annotated for the first time. The complete chloroplast genome sequence was 156,139 bp in length, containing a large single copy region (LSC) of 85,430 bp and a small single copy region (SSC) of 19,970 bp, which were separated by a pair of 25,367 bp inverted repeat regions (IRs). The complete chloroplast sequence contained 112 unique genes, including 30 tRNA, 4 rRNA, and 78 protein-coding genes. The overall guanine-cytosine (GC) content of the chloroplast genome was 37.8%, and the GC contents of the LSC, SSC, and IR regions were 36.0%, 31.3%, and 43.5%, respectively. Phylogenetic analysis with the reported chloroplast sequences showed that R. pekinensis was closely related to R. bungei Steud. 1841, both of which belonged to Ranunculus Sect. Batrachium DC. 1817. These data will provide essential resources regarding the evolution and conservation of R. pekinensis.
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spelling pubmed-91036072022-05-14 The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China Liu, Xuehua Yang, Wenli Zhang, Danke Liu, Hao Cui, Yueming Wang, Lei Hu, Hongyu Yin, Yue Zhang, Gangmin Mitochondrial DNA B Resour Plastome Announcement Ranunculus pekinensis (L. Liou) Luferov 1997, a perennial aquatic herb, is endemic to Beijing, China and has high water quality requirements. Because its habitat is under great threat and its population is declining, it is now listed as a national protected plant in China. To provide genomic resources for future research of this endangered species, the complete chloroplast genome sequence of R. pekinensis was assembled and annotated for the first time. The complete chloroplast genome sequence was 156,139 bp in length, containing a large single copy region (LSC) of 85,430 bp and a small single copy region (SSC) of 19,970 bp, which were separated by a pair of 25,367 bp inverted repeat regions (IRs). The complete chloroplast sequence contained 112 unique genes, including 30 tRNA, 4 rRNA, and 78 protein-coding genes. The overall guanine-cytosine (GC) content of the chloroplast genome was 37.8%, and the GC contents of the LSC, SSC, and IR regions were 36.0%, 31.3%, and 43.5%, respectively. Phylogenetic analysis with the reported chloroplast sequences showed that R. pekinensis was closely related to R. bungei Steud. 1841, both of which belonged to Ranunculus Sect. Batrachium DC. 1817. These data will provide essential resources regarding the evolution and conservation of R. pekinensis. Taylor & Francis 2022-05-11 /pmc/articles/PMC9103607/ /pubmed/35573603 http://dx.doi.org/10.1080/23802359.2022.2073841 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Liu, Xuehua
Yang, Wenli
Zhang, Danke
Liu, Hao
Cui, Yueming
Wang, Lei
Hu, Hongyu
Yin, Yue
Zhang, Gangmin
The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title_full The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title_fullStr The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title_full_unstemmed The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title_short The complete chloroplast genome sequence of Ranunculus pekinensis (L. Liou) Luferov (Ranunculaceae), a species endemic to China
title_sort complete chloroplast genome sequence of ranunculus pekinensis (l. liou) luferov (ranunculaceae), a species endemic to china
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103607/
https://www.ncbi.nlm.nih.gov/pubmed/35573603
http://dx.doi.org/10.1080/23802359.2022.2073841
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