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Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae
Plantago asiatica, an herbaceous perennial species of Plantaginaceae, has been used as a traditional herbal medicine plant in China. In this study, the complete chloroplast (cp) genome of P. asiatica was sequenced and assembled using genome skimming data. The cp genome was 165,045 bp in length inclu...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103697/ https://www.ncbi.nlm.nih.gov/pubmed/35573592 http://dx.doi.org/10.1080/23802359.2022.2073838 |
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author | Si, Hao Li, Rui Zhang, Qingde Liu, Luxian |
author_facet | Si, Hao Li, Rui Zhang, Qingde Liu, Luxian |
author_sort | Si, Hao |
collection | PubMed |
description | Plantago asiatica, an herbaceous perennial species of Plantaginaceae, has been used as a traditional herbal medicine plant in China. In this study, the complete chloroplast (cp) genome of P. asiatica was sequenced and assembled using genome skimming data. The cp genome was 165,045 bp in length including the large single-copy (LSC, 82,964 bp) and small single-copy (SSC, 4,633 bp) regions separated by two copies of inverted region (IR, 38,724 bp). The cp genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, additionally with 27 duplicated genes in the IR regions. Phylogenetic analysis indicated that the representative species from Plantago was monophyletic and they were divided into four subgenera. P. asiatica belongs to the subgenus Plantago and was sister to P. rigida with high bootstrap value support. |
format | Online Article Text |
id | pubmed-9103697 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-91036972022-05-14 Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae Si, Hao Li, Rui Zhang, Qingde Liu, Luxian Mitochondrial DNA B Resour Mitogenome Announcement Plantago asiatica, an herbaceous perennial species of Plantaginaceae, has been used as a traditional herbal medicine plant in China. In this study, the complete chloroplast (cp) genome of P. asiatica was sequenced and assembled using genome skimming data. The cp genome was 165,045 bp in length including the large single-copy (LSC, 82,964 bp) and small single-copy (SSC, 4,633 bp) regions separated by two copies of inverted region (IR, 38,724 bp). The cp genome encoded 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, additionally with 27 duplicated genes in the IR regions. Phylogenetic analysis indicated that the representative species from Plantago was monophyletic and they were divided into four subgenera. P. asiatica belongs to the subgenus Plantago and was sister to P. rigida with high bootstrap value support. Taylor & Francis 2022-05-10 /pmc/articles/PMC9103697/ /pubmed/35573592 http://dx.doi.org/10.1080/23802359.2022.2073838 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Si, Hao Li, Rui Zhang, Qingde Liu, Luxian Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title | Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title_full | Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title_fullStr | Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title_full_unstemmed | Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title_short | Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae |
title_sort | complete chloroplast genome of plantago asiatica and its phylogenetic position in plantaginaceae |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9103697/ https://www.ncbi.nlm.nih.gov/pubmed/35573592 http://dx.doi.org/10.1080/23802359.2022.2073838 |
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