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Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.)
The TALE gene family is an important transcription factor family that regulates meristem formation, organ morphogenesis, signal transduction, and fruit development. A total of 24 genes of the TALE family were identified and analyzed in tomato. The 24 SlTALE family members could be classified into fi...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104321/ https://www.ncbi.nlm.nih.gov/pubmed/35562896 http://dx.doi.org/10.3390/ijms23094507 |
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author | Wang, Jin Zhao, Pan Cheng, Baohui Zhang, Yanhong Shen, Yuanbo Wang, Xinyu Zhang, Qinghua Lou, Qianqi Zhang, Shijie Wang, Bo Qi, Shiming Li, Yushun Islam, Md. Monirul Muhammad, Tayeb Zhang, Fei Liang, Yan |
author_facet | Wang, Jin Zhao, Pan Cheng, Baohui Zhang, Yanhong Shen, Yuanbo Wang, Xinyu Zhang, Qinghua Lou, Qianqi Zhang, Shijie Wang, Bo Qi, Shiming Li, Yushun Islam, Md. Monirul Muhammad, Tayeb Zhang, Fei Liang, Yan |
author_sort | Wang, Jin |
collection | PubMed |
description | The TALE gene family is an important transcription factor family that regulates meristem formation, organ morphogenesis, signal transduction, and fruit development. A total of 24 genes of the TALE family were identified and analyzed in tomato. The 24 SlTALE family members could be classified into five BELL subfamilies and four KNOX subfamilies. SlTALE genes were unevenly distributed on every tomato chromosome, lacked syntenic gene pairs, and had conserved structures but diverse regulatory functions. Promoter activity analysis showed that cis-elements responsive to light, phytohormone, developmental regulation, and environmental stress were enriched in the promoter of SlTALE genes, and the light response elements were the most abundant. An abundance of TF binding sites was also enriched in the promoter of SlTALE genes. Phenotype identification revealed that the green shoulder (GS) mutant fruits showed significantly enhanced chloroplast development and chlorophyll accumulation, and a significant increase of chlorophyll fluorescence parameters in the fruit shoulder region. Analysis of gene expression patterns indicated that six SlTALE genes were highly expressed in the GS fruit shoulder region, and four SlTALE genes were highly expressed in the parts with less-developed chloroplasts. The protein-protein interaction networks predicted interaction combinations among these SlTALE genes, especially between the BELL subfamilies and the KNOX subfamilies, indicating a complex regulatory network of these SlTALE genes in chloroplast development and green fruit shoulder formation. In conclusion, our result provides detailed knowledge of the SlTALE gene for functional research and the utilization of the TALE gene family in fruit quality improvement. |
format | Online Article Text |
id | pubmed-9104321 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-91043212022-05-14 Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) Wang, Jin Zhao, Pan Cheng, Baohui Zhang, Yanhong Shen, Yuanbo Wang, Xinyu Zhang, Qinghua Lou, Qianqi Zhang, Shijie Wang, Bo Qi, Shiming Li, Yushun Islam, Md. Monirul Muhammad, Tayeb Zhang, Fei Liang, Yan Int J Mol Sci Article The TALE gene family is an important transcription factor family that regulates meristem formation, organ morphogenesis, signal transduction, and fruit development. A total of 24 genes of the TALE family were identified and analyzed in tomato. The 24 SlTALE family members could be classified into five BELL subfamilies and four KNOX subfamilies. SlTALE genes were unevenly distributed on every tomato chromosome, lacked syntenic gene pairs, and had conserved structures but diverse regulatory functions. Promoter activity analysis showed that cis-elements responsive to light, phytohormone, developmental regulation, and environmental stress were enriched in the promoter of SlTALE genes, and the light response elements were the most abundant. An abundance of TF binding sites was also enriched in the promoter of SlTALE genes. Phenotype identification revealed that the green shoulder (GS) mutant fruits showed significantly enhanced chloroplast development and chlorophyll accumulation, and a significant increase of chlorophyll fluorescence parameters in the fruit shoulder region. Analysis of gene expression patterns indicated that six SlTALE genes were highly expressed in the GS fruit shoulder region, and four SlTALE genes were highly expressed in the parts with less-developed chloroplasts. The protein-protein interaction networks predicted interaction combinations among these SlTALE genes, especially between the BELL subfamilies and the KNOX subfamilies, indicating a complex regulatory network of these SlTALE genes in chloroplast development and green fruit shoulder formation. In conclusion, our result provides detailed knowledge of the SlTALE gene for functional research and the utilization of the TALE gene family in fruit quality improvement. MDPI 2022-04-19 /pmc/articles/PMC9104321/ /pubmed/35562896 http://dx.doi.org/10.3390/ijms23094507 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Jin Zhao, Pan Cheng, Baohui Zhang, Yanhong Shen, Yuanbo Wang, Xinyu Zhang, Qinghua Lou, Qianqi Zhang, Shijie Wang, Bo Qi, Shiming Li, Yushun Islam, Md. Monirul Muhammad, Tayeb Zhang, Fei Liang, Yan Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title | Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title_full | Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title_fullStr | Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title_full_unstemmed | Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title_short | Identification of TALE Transcription Factor Family and Expression Patterns Related to Fruit Chloroplast Development in Tomato (Solanum lycopersicum L.) |
title_sort | identification of tale transcription factor family and expression patterns related to fruit chloroplast development in tomato (solanum lycopersicum l.) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104321/ https://www.ncbi.nlm.nih.gov/pubmed/35562896 http://dx.doi.org/10.3390/ijms23094507 |
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