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Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images

We propose an encoder–decoder architecture using wide and deep convolutional layers combined with different aggregation modules for the segmentation of medical images. Initially, we obtain a rich representation of features that span from low to high levels and from small to large scales by stacking...

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Autores principales: Yamanakkanavar, Nagaraj, Choi, Jae Young, Lee, Bumshik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104396/
https://www.ncbi.nlm.nih.gov/pubmed/35591129
http://dx.doi.org/10.3390/s22093440
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author Yamanakkanavar, Nagaraj
Choi, Jae Young
Lee, Bumshik
author_facet Yamanakkanavar, Nagaraj
Choi, Jae Young
Lee, Bumshik
author_sort Yamanakkanavar, Nagaraj
collection PubMed
description We propose an encoder–decoder architecture using wide and deep convolutional layers combined with different aggregation modules for the segmentation of medical images. Initially, we obtain a rich representation of features that span from low to high levels and from small to large scales by stacking multiple k × k kernels, where each k × k kernel operation is split into k × 1 and 1 × k convolutions. In addition, we introduce two feature-aggregation modules—multiscale feature aggregation (MFA) and hierarchical feature aggregation (HFA)—to better fuse information across end-to-end network layers. The MFA module progressively aggregates features and enriches feature representation, whereas the HFA module merges the features iteratively and hierarchically to learn richer combinations of the feature hierarchy. Furthermore, because residual connections are advantageous for assembling very deep networks, we employ an MFA-based long residual connections to avoid vanishing gradients along the aggregation paths. In addition, a guided block with multilevel convolution provides effective attention to the features that were copied from the encoder to the decoder to recover spatial information. Thus, the proposed method using feature-aggregation modules combined with a guided skip connection improves the segmentation accuracy, achieving a high similarity index for ground-truth segmentation maps. Experimental results indicate that the proposed model achieves a superior segmentation performance to that obtained by conventional methods for skin-lesion segmentation, with an average accuracy score of 0.97 on the ISIC-2018, PH2, and UFBA-UESC datasets.
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spelling pubmed-91043962022-05-14 Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images Yamanakkanavar, Nagaraj Choi, Jae Young Lee, Bumshik Sensors (Basel) Article We propose an encoder–decoder architecture using wide and deep convolutional layers combined with different aggregation modules for the segmentation of medical images. Initially, we obtain a rich representation of features that span from low to high levels and from small to large scales by stacking multiple k × k kernels, where each k × k kernel operation is split into k × 1 and 1 × k convolutions. In addition, we introduce two feature-aggregation modules—multiscale feature aggregation (MFA) and hierarchical feature aggregation (HFA)—to better fuse information across end-to-end network layers. The MFA module progressively aggregates features and enriches feature representation, whereas the HFA module merges the features iteratively and hierarchically to learn richer combinations of the feature hierarchy. Furthermore, because residual connections are advantageous for assembling very deep networks, we employ an MFA-based long residual connections to avoid vanishing gradients along the aggregation paths. In addition, a guided block with multilevel convolution provides effective attention to the features that were copied from the encoder to the decoder to recover spatial information. Thus, the proposed method using feature-aggregation modules combined with a guided skip connection improves the segmentation accuracy, achieving a high similarity index for ground-truth segmentation maps. Experimental results indicate that the proposed model achieves a superior segmentation performance to that obtained by conventional methods for skin-lesion segmentation, with an average accuracy score of 0.97 on the ISIC-2018, PH2, and UFBA-UESC datasets. MDPI 2022-04-30 /pmc/articles/PMC9104396/ /pubmed/35591129 http://dx.doi.org/10.3390/s22093440 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yamanakkanavar, Nagaraj
Choi, Jae Young
Lee, Bumshik
Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title_full Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title_fullStr Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title_full_unstemmed Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title_short Multiscale and Hierarchical Feature-Aggregation Network for Segmenting Medical Images
title_sort multiscale and hierarchical feature-aggregation network for segmenting medical images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104396/
https://www.ncbi.nlm.nih.gov/pubmed/35591129
http://dx.doi.org/10.3390/s22093440
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