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Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity

Identification of ionic liquids with low toxicity is paramount for applications in various domains. Traditional approaches used for determining the toxicity of ionic liquids are often expensive, and can be labor intensive and time consuming. In order to mitigate these limitations, researchers have r...

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Detalles Bibliográficos
Autores principales: Chipofya, Mapopa, Tayara, Hilal, Chong, Kil To
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104997/
https://www.ncbi.nlm.nih.gov/pubmed/35563648
http://dx.doi.org/10.3390/ijms23095258
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author Chipofya, Mapopa
Tayara, Hilal
Chong, Kil To
author_facet Chipofya, Mapopa
Tayara, Hilal
Chong, Kil To
author_sort Chipofya, Mapopa
collection PubMed
description Identification of ionic liquids with low toxicity is paramount for applications in various domains. Traditional approaches used for determining the toxicity of ionic liquids are often expensive, and can be labor intensive and time consuming. In order to mitigate these limitations, researchers have resorted to using computational models. This work presents a probabilistic model built from deep kernel learning with the aim of predicting the toxicity of ionic liquids in the leukemia rat cell line (IPC-81). Only open source tools, namely, RDKit and Mol2vec, are required to generate predictors for this model; as such, its predictions are solely based on chemical structure of the ionic liquids and no manual extraction of features is needed. The model recorded an RMSE of 0.228 and [Formula: see text] of 0.943. These results indicate that the model is both reliable and accurate. Furthermore, this model provides an accompanying uncertainty level for every prediction it makes. This is important because discrepancies in experimental measurements that generated the dataset used herein are inevitable, and ought to be modeled. A user-friendly web server was developed as well, enabling researchers and practitioners ti make predictions using this model.
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spelling pubmed-91049972022-05-14 Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity Chipofya, Mapopa Tayara, Hilal Chong, Kil To Int J Mol Sci Article Identification of ionic liquids with low toxicity is paramount for applications in various domains. Traditional approaches used for determining the toxicity of ionic liquids are often expensive, and can be labor intensive and time consuming. In order to mitigate these limitations, researchers have resorted to using computational models. This work presents a probabilistic model built from deep kernel learning with the aim of predicting the toxicity of ionic liquids in the leukemia rat cell line (IPC-81). Only open source tools, namely, RDKit and Mol2vec, are required to generate predictors for this model; as such, its predictions are solely based on chemical structure of the ionic liquids and no manual extraction of features is needed. The model recorded an RMSE of 0.228 and [Formula: see text] of 0.943. These results indicate that the model is both reliable and accurate. Furthermore, this model provides an accompanying uncertainty level for every prediction it makes. This is important because discrepancies in experimental measurements that generated the dataset used herein are inevitable, and ought to be modeled. A user-friendly web server was developed as well, enabling researchers and practitioners ti make predictions using this model. MDPI 2022-05-09 /pmc/articles/PMC9104997/ /pubmed/35563648 http://dx.doi.org/10.3390/ijms23095258 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chipofya, Mapopa
Tayara, Hilal
Chong, Kil To
Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title_full Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title_fullStr Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title_full_unstemmed Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title_short Deep Probabilistic Learning Model for Prediction of Ionic Liquids Toxicity
title_sort deep probabilistic learning model for prediction of ionic liquids toxicity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104997/
https://www.ncbi.nlm.nih.gov/pubmed/35563648
http://dx.doi.org/10.3390/ijms23095258
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