Cargando…
Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source
Sugar transporter proteins (STPs) are membrane proteins required for sugar transport throughout cellular membranes. They plays an imperative role in sugar transmission across the plant and determinants of crop yield. However, the analysis of these important STPs Sugars Will Eventually be Exported Tr...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106169/ https://www.ncbi.nlm.nih.gov/pubmed/35560044 http://dx.doi.org/10.1371/journal.pone.0268154 |
_version_ | 1784708218749976576 |
---|---|
author | Singh, Nisha Ujinwal, Megha Langyan, Sapna Sayyed, R. Z. El Enshasy, Hesham Ali Kenawy, Ahmed A. |
author_facet | Singh, Nisha Ujinwal, Megha Langyan, Sapna Sayyed, R. Z. El Enshasy, Hesham Ali Kenawy, Ahmed A. |
author_sort | Singh, Nisha |
collection | PubMed |
description | Sugar transporter proteins (STPs) are membrane proteins required for sugar transport throughout cellular membranes. They plays an imperative role in sugar transmission across the plant and determinants of crop yield. However, the analysis of these important STPs Sugars Will Eventually be Exported Transporters (SWEET) family in legumes is still not well-documented and remains unclear. Therefore, the in-silico analysis of STPs has been performed to unravel their cellular, molecular, and structural composition in legume species. This study conducted a systematic search for STPs in Cajanus cajan using the Blastp algorithm to understand its molecular basis. Here, we performed a comprehensive analysis of 155 identified SWEET proteins across 12 legumes species, namely (Cajanus cajan, Glycine max, Vigna radiate, Vigna angularis, Medicago truncatula, Lupinus angustifolius, Glycine soja, Spatholobus suberectus, Cicer arietinum, Arachis ipaensis, Arachis hypogaea, Arachis duranensis). The amino acid composition and motif analysis revealed that SWEET proteins are rich in essential amino acids such as leucine, valine, isoleucine, phenylalanine, and serine while less profuse in glutamine, tryptophan, cysteine, and histidine. A total of four main conserved motifs of SWEET proteins are also highly abundant in these amino acids. The present study deciphered the details on primary physicochemical properties, secondary, tertiary structure, and phylogenetic analysis of SWEETs protein. Majorities of SWEET proteins (72.26%) are in stable form with an average instability index of 36.5%, and it comprises a higher fraction of positively charged amino acid Arg + Lys residues. Secondary structure analysis shown that these proteins are richer in alpha-helix (40%) than extended strand (30%) and random coil (25%), respectively. Furthermore, to infer their mechanism at a structural and functional level which play an essential roles in growth, development, and stress responses. This study will be useful to examine photosynthetic productivity, embryo sugar content, seed quality, and yield enhancement in Fabaceae for a sustainable source of essential amino acids and carbon source. |
format | Online Article Text |
id | pubmed-9106169 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-91061692022-05-14 Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source Singh, Nisha Ujinwal, Megha Langyan, Sapna Sayyed, R. Z. El Enshasy, Hesham Ali Kenawy, Ahmed A. PLoS One Research Article Sugar transporter proteins (STPs) are membrane proteins required for sugar transport throughout cellular membranes. They plays an imperative role in sugar transmission across the plant and determinants of crop yield. However, the analysis of these important STPs Sugars Will Eventually be Exported Transporters (SWEET) family in legumes is still not well-documented and remains unclear. Therefore, the in-silico analysis of STPs has been performed to unravel their cellular, molecular, and structural composition in legume species. This study conducted a systematic search for STPs in Cajanus cajan using the Blastp algorithm to understand its molecular basis. Here, we performed a comprehensive analysis of 155 identified SWEET proteins across 12 legumes species, namely (Cajanus cajan, Glycine max, Vigna radiate, Vigna angularis, Medicago truncatula, Lupinus angustifolius, Glycine soja, Spatholobus suberectus, Cicer arietinum, Arachis ipaensis, Arachis hypogaea, Arachis duranensis). The amino acid composition and motif analysis revealed that SWEET proteins are rich in essential amino acids such as leucine, valine, isoleucine, phenylalanine, and serine while less profuse in glutamine, tryptophan, cysteine, and histidine. A total of four main conserved motifs of SWEET proteins are also highly abundant in these amino acids. The present study deciphered the details on primary physicochemical properties, secondary, tertiary structure, and phylogenetic analysis of SWEETs protein. Majorities of SWEET proteins (72.26%) are in stable form with an average instability index of 36.5%, and it comprises a higher fraction of positively charged amino acid Arg + Lys residues. Secondary structure analysis shown that these proteins are richer in alpha-helix (40%) than extended strand (30%) and random coil (25%), respectively. Furthermore, to infer their mechanism at a structural and functional level which play an essential roles in growth, development, and stress responses. This study will be useful to examine photosynthetic productivity, embryo sugar content, seed quality, and yield enhancement in Fabaceae for a sustainable source of essential amino acids and carbon source. Public Library of Science 2022-05-13 /pmc/articles/PMC9106169/ /pubmed/35560044 http://dx.doi.org/10.1371/journal.pone.0268154 Text en © 2022 Singh et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Singh, Nisha Ujinwal, Megha Langyan, Sapna Sayyed, R. Z. El Enshasy, Hesham Ali Kenawy, Ahmed A. Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title | Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title_full | Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title_fullStr | Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title_full_unstemmed | Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title_short | Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source |
title_sort | genome-wide exploration of sugar transporter (sweet) family proteins in fabaceae for sustainable protein and carbon source |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106169/ https://www.ncbi.nlm.nih.gov/pubmed/35560044 http://dx.doi.org/10.1371/journal.pone.0268154 |
work_keys_str_mv | AT singhnisha genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource AT ujinwalmegha genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource AT langyansapna genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource AT sayyedrz genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource AT elenshasyheshamali genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource AT kenawyahmeda genomewideexplorationofsugartransportersweetfamilyproteinsinfabaceaeforsustainableproteinandcarbonsource |