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Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons

Unlike spiking neurons which compress continuous inputs into digital signals for transmitting information via action potentials, non-spiking neurons modulate analog signals through graded potential responses. Such neurons have been found in a large variety of nervous tissues in both vertebrate and i...

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Autores principales: Naudin, Loïs, Jiménez Laredo, Juan Luis, Liu, Qiang, Corson, Nathalie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106219/
https://www.ncbi.nlm.nih.gov/pubmed/35560186
http://dx.doi.org/10.1371/journal.pone.0268380
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author Naudin, Loïs
Jiménez Laredo, Juan Luis
Liu, Qiang
Corson, Nathalie
author_facet Naudin, Loïs
Jiménez Laredo, Juan Luis
Liu, Qiang
Corson, Nathalie
author_sort Naudin, Loïs
collection PubMed
description Unlike spiking neurons which compress continuous inputs into digital signals for transmitting information via action potentials, non-spiking neurons modulate analog signals through graded potential responses. Such neurons have been found in a large variety of nervous tissues in both vertebrate and invertebrate species, and have been proven to play a central role in neuronal information processing. If general and vast efforts have been made for many years to model spiking neurons using conductance-based models (CBMs), very few methods have been developed for non-spiking neurons. When a CBM is built to characterize the neuron behavior, it should be endowed with generalization capabilities (i.e. the ability to predict acceptable neuronal responses to different novel stimuli not used during the model’s building). Yet, since CBMs contain a large number of parameters, they may typically suffer from a lack of such a capability. In this paper, we propose a new systematic approach based on multi-objective optimization which builds general non-spiking models with generalization capabilities. The proposed approach only requires macroscopic experimental data from which all the model parameters are simultaneously determined without compromise. Such an approach is applied on three non-spiking neurons of the nematode Caenorhabditis elegans (C. elegans), a well-known model organism in neuroscience that predominantly transmits information through non-spiking signals. These three neurons, arbitrarily labeled by convention as RIM, AIY and AFD, represent, to date, the three possible forms of non-spiking neuronal responses of C. elegans.
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spelling pubmed-91062192022-05-14 Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons Naudin, Loïs Jiménez Laredo, Juan Luis Liu, Qiang Corson, Nathalie PLoS One Research Article Unlike spiking neurons which compress continuous inputs into digital signals for transmitting information via action potentials, non-spiking neurons modulate analog signals through graded potential responses. Such neurons have been found in a large variety of nervous tissues in both vertebrate and invertebrate species, and have been proven to play a central role in neuronal information processing. If general and vast efforts have been made for many years to model spiking neurons using conductance-based models (CBMs), very few methods have been developed for non-spiking neurons. When a CBM is built to characterize the neuron behavior, it should be endowed with generalization capabilities (i.e. the ability to predict acceptable neuronal responses to different novel stimuli not used during the model’s building). Yet, since CBMs contain a large number of parameters, they may typically suffer from a lack of such a capability. In this paper, we propose a new systematic approach based on multi-objective optimization which builds general non-spiking models with generalization capabilities. The proposed approach only requires macroscopic experimental data from which all the model parameters are simultaneously determined without compromise. Such an approach is applied on three non-spiking neurons of the nematode Caenorhabditis elegans (C. elegans), a well-known model organism in neuroscience that predominantly transmits information through non-spiking signals. These three neurons, arbitrarily labeled by convention as RIM, AIY and AFD, represent, to date, the three possible forms of non-spiking neuronal responses of C. elegans. Public Library of Science 2022-05-13 /pmc/articles/PMC9106219/ /pubmed/35560186 http://dx.doi.org/10.1371/journal.pone.0268380 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Naudin, Loïs
Jiménez Laredo, Juan Luis
Liu, Qiang
Corson, Nathalie
Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title_full Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title_fullStr Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title_full_unstemmed Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title_short Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
title_sort systematic generation of biophysically detailed models with generalization capability for non-spiking neurons
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106219/
https://www.ncbi.nlm.nih.gov/pubmed/35560186
http://dx.doi.org/10.1371/journal.pone.0268380
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