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A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells

To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro....

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Autores principales: Turner, David J, Saveliev, Alexander, Salerno, Fiamma, Matheson, Louise S, Screen, Michael, Lawson, Hannah, Wotherspoon, David, Kranc, Kamil R, Turner, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106329/
https://www.ncbi.nlm.nih.gov/pubmed/35451955
http://dx.doi.org/10.7554/eLife.72313
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author Turner, David J
Saveliev, Alexander
Salerno, Fiamma
Matheson, Louise S
Screen, Michael
Lawson, Hannah
Wotherspoon, David
Kranc, Kamil R
Turner, Martin
author_facet Turner, David J
Saveliev, Alexander
Salerno, Fiamma
Matheson, Louise S
Screen, Michael
Lawson, Hannah
Wotherspoon, David
Kranc, Kamil R
Turner, Martin
author_sort Turner, David J
collection PubMed
description To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro. We validated the binding partners CSDE1 and STRAP as well as the m(6)A binding protein YTHDF2 as promoting the accumulation of CD138 + cells in vitro. We validated the EIF3 subunits EIF3K and EIF3L and components of the CCR4-NOT complex as inhibitors of CD138 + cell accumulation in vitro. In chimeric mouse models YTHDF2-deficient plasma cells failed to accumulate.
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spelling pubmed-91063292022-05-14 A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells Turner, David J Saveliev, Alexander Salerno, Fiamma Matheson, Louise S Screen, Michael Lawson, Hannah Wotherspoon, David Kranc, Kamil R Turner, Martin eLife Developmental Biology To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro. We validated the binding partners CSDE1 and STRAP as well as the m(6)A binding protein YTHDF2 as promoting the accumulation of CD138 + cells in vitro. We validated the EIF3 subunits EIF3K and EIF3L and components of the CCR4-NOT complex as inhibitors of CD138 + cell accumulation in vitro. In chimeric mouse models YTHDF2-deficient plasma cells failed to accumulate. eLife Sciences Publications, Ltd 2022-04-22 /pmc/articles/PMC9106329/ /pubmed/35451955 http://dx.doi.org/10.7554/eLife.72313 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication (https://creativecommons.org/publicdomain/zero/1.0/) .
spellingShingle Developmental Biology
Turner, David J
Saveliev, Alexander
Salerno, Fiamma
Matheson, Louise S
Screen, Michael
Lawson, Hannah
Wotherspoon, David
Kranc, Kamil R
Turner, Martin
A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title_full A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title_fullStr A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title_full_unstemmed A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title_short A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
title_sort functional screen of rna binding proteins identifies genes that promote or limit the accumulation of cd138+ plasma cells
topic Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106329/
https://www.ncbi.nlm.nih.gov/pubmed/35451955
http://dx.doi.org/10.7554/eLife.72313
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