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A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells
To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro....
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106329/ https://www.ncbi.nlm.nih.gov/pubmed/35451955 http://dx.doi.org/10.7554/eLife.72313 |
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author | Turner, David J Saveliev, Alexander Salerno, Fiamma Matheson, Louise S Screen, Michael Lawson, Hannah Wotherspoon, David Kranc, Kamil R Turner, Martin |
author_facet | Turner, David J Saveliev, Alexander Salerno, Fiamma Matheson, Louise S Screen, Michael Lawson, Hannah Wotherspoon, David Kranc, Kamil R Turner, Martin |
author_sort | Turner, David J |
collection | PubMed |
description | To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro. We validated the binding partners CSDE1 and STRAP as well as the m(6)A binding protein YTHDF2 as promoting the accumulation of CD138 + cells in vitro. We validated the EIF3 subunits EIF3K and EIF3L and components of the CCR4-NOT complex as inhibitors of CD138 + cell accumulation in vitro. In chimeric mouse models YTHDF2-deficient plasma cells failed to accumulate. |
format | Online Article Text |
id | pubmed-9106329 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-91063292022-05-14 A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells Turner, David J Saveliev, Alexander Salerno, Fiamma Matheson, Louise S Screen, Michael Lawson, Hannah Wotherspoon, David Kranc, Kamil R Turner, Martin eLife Developmental Biology To identify roles of RNA binding proteins (RBPs) in the differentiation or survival of antibody secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the abundance of differentiated CD138 + cells in vitro. We validated the binding partners CSDE1 and STRAP as well as the m(6)A binding protein YTHDF2 as promoting the accumulation of CD138 + cells in vitro. We validated the EIF3 subunits EIF3K and EIF3L and components of the CCR4-NOT complex as inhibitors of CD138 + cell accumulation in vitro. In chimeric mouse models YTHDF2-deficient plasma cells failed to accumulate. eLife Sciences Publications, Ltd 2022-04-22 /pmc/articles/PMC9106329/ /pubmed/35451955 http://dx.doi.org/10.7554/eLife.72313 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication (https://creativecommons.org/publicdomain/zero/1.0/) . |
spellingShingle | Developmental Biology Turner, David J Saveliev, Alexander Salerno, Fiamma Matheson, Louise S Screen, Michael Lawson, Hannah Wotherspoon, David Kranc, Kamil R Turner, Martin A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title | A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title_full | A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title_fullStr | A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title_full_unstemmed | A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title_short | A functional screen of RNA binding proteins identifies genes that promote or limit the accumulation of CD138+ plasma cells |
title_sort | functional screen of rna binding proteins identifies genes that promote or limit the accumulation of cd138+ plasma cells |
topic | Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9106329/ https://www.ncbi.nlm.nih.gov/pubmed/35451955 http://dx.doi.org/10.7554/eLife.72313 |
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