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Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia

The clock drawing test (CDT) is an inexpensive tool to screen for dementia. In this study, we examined if a variational autoencoder (VAE) with only two latent variables can capture and encode clock drawing anomalies from a large dataset of unannotated CDTs (n = 13,580) using self-supervised pre-trai...

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Autores principales: Bandyopadhyay, Sabyasachi, Dion, Catherine, Libon, David J., Price, Catherine, Tighe, Patrick, Rashidi, Parisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9107463/
https://www.ncbi.nlm.nih.gov/pubmed/35568709
http://dx.doi.org/10.1038/s41598-022-12024-8
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author Bandyopadhyay, Sabyasachi
Dion, Catherine
Libon, David J.
Price, Catherine
Tighe, Patrick
Rashidi, Parisa
author_facet Bandyopadhyay, Sabyasachi
Dion, Catherine
Libon, David J.
Price, Catherine
Tighe, Patrick
Rashidi, Parisa
author_sort Bandyopadhyay, Sabyasachi
collection PubMed
description The clock drawing test (CDT) is an inexpensive tool to screen for dementia. In this study, we examined if a variational autoencoder (VAE) with only two latent variables can capture and encode clock drawing anomalies from a large dataset of unannotated CDTs (n = 13,580) using self-supervised pre-training and use them to classify dementia CDTs (n = 18) from non-dementia CDTs (n = 20). The model was independently validated using a larger cohort consisting of 41 dementia and 50 non-dementia clocks. The classification model built with the parsimonious VAE latent space adequately classified dementia from non-dementia (0.78 area under receiver operating characteristics (AUROC) in the original test dataset and 0.77 AUROC in the secondary validation dataset). The VAE-identified atypical clock features were then reviewed by domain experts and compared with existing literature on clock drawing errors. This study shows that a very small number of latent variables are sufficient to encode important clock drawing anomalies that are predictive of dementia.
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spelling pubmed-91074632022-05-16 Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia Bandyopadhyay, Sabyasachi Dion, Catherine Libon, David J. Price, Catherine Tighe, Patrick Rashidi, Parisa Sci Rep Article The clock drawing test (CDT) is an inexpensive tool to screen for dementia. In this study, we examined if a variational autoencoder (VAE) with only two latent variables can capture and encode clock drawing anomalies from a large dataset of unannotated CDTs (n = 13,580) using self-supervised pre-training and use them to classify dementia CDTs (n = 18) from non-dementia CDTs (n = 20). The model was independently validated using a larger cohort consisting of 41 dementia and 50 non-dementia clocks. The classification model built with the parsimonious VAE latent space adequately classified dementia from non-dementia (0.78 area under receiver operating characteristics (AUROC) in the original test dataset and 0.77 AUROC in the secondary validation dataset). The VAE-identified atypical clock features were then reviewed by domain experts and compared with existing literature on clock drawing errors. This study shows that a very small number of latent variables are sufficient to encode important clock drawing anomalies that are predictive of dementia. Nature Publishing Group UK 2022-05-14 /pmc/articles/PMC9107463/ /pubmed/35568709 http://dx.doi.org/10.1038/s41598-022-12024-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Bandyopadhyay, Sabyasachi
Dion, Catherine
Libon, David J.
Price, Catherine
Tighe, Patrick
Rashidi, Parisa
Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title_full Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title_fullStr Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title_full_unstemmed Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title_short Variational autoencoder provides proof of concept that compressing CDT to extremely low-dimensional space retains its ability of distinguishing dementia
title_sort variational autoencoder provides proof of concept that compressing cdt to extremely low-dimensional space retains its ability of distinguishing dementia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9107463/
https://www.ncbi.nlm.nih.gov/pubmed/35568709
http://dx.doi.org/10.1038/s41598-022-12024-8
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