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Quantifying phenological diversity: a framework based on Hill numbers theory

BACKGROUND: Despite the great concern triggered by the environmental crisis worldwide, the loss of temporal key functions and processes involved in biodiversity maintenance has received little attention. Species are restricted in their life cycles by environmental variables because of their physiolo...

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Autores principales: Sánchez-Ochoa, Daniel, González, Edgar J., Arizmendi, Maria del Coro, Koleff, Patricia, Martell-Dubois, Raúl, Meave, Jorge A., Pérez-Mendoza, Hibraim Adán
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9107786/
https://www.ncbi.nlm.nih.gov/pubmed/35582616
http://dx.doi.org/10.7717/peerj.13412
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author Sánchez-Ochoa, Daniel
González, Edgar J.
Arizmendi, Maria del Coro
Koleff, Patricia
Martell-Dubois, Raúl
Meave, Jorge A.
Pérez-Mendoza, Hibraim Adán
author_facet Sánchez-Ochoa, Daniel
González, Edgar J.
Arizmendi, Maria del Coro
Koleff, Patricia
Martell-Dubois, Raúl
Meave, Jorge A.
Pérez-Mendoza, Hibraim Adán
author_sort Sánchez-Ochoa, Daniel
collection PubMed
description BACKGROUND: Despite the great concern triggered by the environmental crisis worldwide, the loss of temporal key functions and processes involved in biodiversity maintenance has received little attention. Species are restricted in their life cycles by environmental variables because of their physiological and behavioral properties; thus, the timing and duration of species’ presence and their activities vary greatly between species within a community. Despite the ecological relevance of such variation, there is currently no measure that summarizes the key temporal aspects of biological diversity and allows comparisons of community phenological patterns. Here, we propose a measure that synthesizes variability of phenological patterns using the Hill numbers-based attribute diversity framework. METHODS: We constructed a new phenological diversity measure based on the aforementioned framework through pairwise overlapping distances, which was supplemented with wavelet analysis. The Hill numbers approach was chosen as an adequate way to define a set of diversity values of different order q, a parameter that determines the sensitivity of the diversity measure to abundance. Wavelet transform analysis was used to model continuous variables from incomplete data sets for different phenophases. The new measure, which we call Phenological Hill numbers (PD), considers the decouplings of phenophases through an overlapping area value between pairs of species within the community. PD was first tested through simulations with varying overlap in phenophase magnitude and intensity and varying number of species, and then by using one real data set. RESULTS: PD maintains the diversity patterns of order q as in any other diversity measure encompassed by the Hill numbers framework. Minimum PD values in the simulated data sets reflect a lack of differentiation in the phenological curves of the community over time; by contrast, the maximum PD values reflected the most diverse simulations in which phenological curves were equally distributed over time. PD values were consistent with the homogeneous distribution of the intensity and concurrence of phenophases over time, both in the simulated and the real data set. DISCUSSION: PD provides an efficient, readily interpretable and comparable measure that summarizes the variety of phenological patterns observed in ecological communities. PD retains the diversity patterns of order q characteristic of all diversity measures encompassed by the distance-based Hill numbers framework. In addition, wavelet transform analysis proved useful for constructing a continuous phenological curve. This methodological approach to quantify phenological diversity produces simple and intuitive values for the examination of phenological diversity and can be widely applied to any taxon or community’s phenological traits.
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spelling pubmed-91077862022-05-16 Quantifying phenological diversity: a framework based on Hill numbers theory Sánchez-Ochoa, Daniel González, Edgar J. Arizmendi, Maria del Coro Koleff, Patricia Martell-Dubois, Raúl Meave, Jorge A. Pérez-Mendoza, Hibraim Adán PeerJ Biodiversity BACKGROUND: Despite the great concern triggered by the environmental crisis worldwide, the loss of temporal key functions and processes involved in biodiversity maintenance has received little attention. Species are restricted in their life cycles by environmental variables because of their physiological and behavioral properties; thus, the timing and duration of species’ presence and their activities vary greatly between species within a community. Despite the ecological relevance of such variation, there is currently no measure that summarizes the key temporal aspects of biological diversity and allows comparisons of community phenological patterns. Here, we propose a measure that synthesizes variability of phenological patterns using the Hill numbers-based attribute diversity framework. METHODS: We constructed a new phenological diversity measure based on the aforementioned framework through pairwise overlapping distances, which was supplemented with wavelet analysis. The Hill numbers approach was chosen as an adequate way to define a set of diversity values of different order q, a parameter that determines the sensitivity of the diversity measure to abundance. Wavelet transform analysis was used to model continuous variables from incomplete data sets for different phenophases. The new measure, which we call Phenological Hill numbers (PD), considers the decouplings of phenophases through an overlapping area value between pairs of species within the community. PD was first tested through simulations with varying overlap in phenophase magnitude and intensity and varying number of species, and then by using one real data set. RESULTS: PD maintains the diversity patterns of order q as in any other diversity measure encompassed by the Hill numbers framework. Minimum PD values in the simulated data sets reflect a lack of differentiation in the phenological curves of the community over time; by contrast, the maximum PD values reflected the most diverse simulations in which phenological curves were equally distributed over time. PD values were consistent with the homogeneous distribution of the intensity and concurrence of phenophases over time, both in the simulated and the real data set. DISCUSSION: PD provides an efficient, readily interpretable and comparable measure that summarizes the variety of phenological patterns observed in ecological communities. PD retains the diversity patterns of order q characteristic of all diversity measures encompassed by the distance-based Hill numbers framework. In addition, wavelet transform analysis proved useful for constructing a continuous phenological curve. This methodological approach to quantify phenological diversity produces simple and intuitive values for the examination of phenological diversity and can be widely applied to any taxon or community’s phenological traits. PeerJ Inc. 2022-05-12 /pmc/articles/PMC9107786/ /pubmed/35582616 http://dx.doi.org/10.7717/peerj.13412 Text en ©2022 Sánchez-Ochoa et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
Sánchez-Ochoa, Daniel
González, Edgar J.
Arizmendi, Maria del Coro
Koleff, Patricia
Martell-Dubois, Raúl
Meave, Jorge A.
Pérez-Mendoza, Hibraim Adán
Quantifying phenological diversity: a framework based on Hill numbers theory
title Quantifying phenological diversity: a framework based on Hill numbers theory
title_full Quantifying phenological diversity: a framework based on Hill numbers theory
title_fullStr Quantifying phenological diversity: a framework based on Hill numbers theory
title_full_unstemmed Quantifying phenological diversity: a framework based on Hill numbers theory
title_short Quantifying phenological diversity: a framework based on Hill numbers theory
title_sort quantifying phenological diversity: a framework based on hill numbers theory
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9107786/
https://www.ncbi.nlm.nih.gov/pubmed/35582616
http://dx.doi.org/10.7717/peerj.13412
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