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Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury

Traumatic brain injury is a medical event of global concern, and a growing body of research suggests that circular RNAs can play very important roles in traumatic brain injury. To explore the functions of more novel and valuable circular RNA in traumatic brain injury response, a moderate traumatic b...

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Autores principales: Li, Gang, Li, Shaoping, Liu, Ruining, Yu, Jiangtao, Ma, Haoli, Zhao, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9108397/
https://www.ncbi.nlm.nih.gov/pubmed/35582420
http://dx.doi.org/10.7150/ijms.71769
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author Li, Gang
Li, Shaoping
Liu, Ruining
Yu, Jiangtao
Ma, Haoli
Zhao, Yan
author_facet Li, Gang
Li, Shaoping
Liu, Ruining
Yu, Jiangtao
Ma, Haoli
Zhao, Yan
author_sort Li, Gang
collection PubMed
description Traumatic brain injury is a medical event of global concern, and a growing body of research suggests that circular RNAs can play very important roles in traumatic brain injury. To explore the functions of more novel and valuable circular RNA in traumatic brain injury response, a moderate traumatic brain injury in rats was established and comprehensive analysis of circular RNA expression profiles in rat cerebral cortex was done. As a result, 301 up-regulated and 284 down-regulated circular RNAs were obtained in moderate traumatic brain injury rats, the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis were performed based on the circular RNA's host genes, and a circRNA-miRNA interaction network based on differentially expressed circular RNAs was constructed. Also, four circular RNAs were validated by RT-qPCR and Sanger sequencing. This study showed that differentially expressed circular RNAs existed between rat cerebral cortex after moderate traumatic brain injury and control. And this will provide valuable information for circular RNA research in the field of traumatic brain injury.
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spelling pubmed-91083972022-05-16 Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury Li, Gang Li, Shaoping Liu, Ruining Yu, Jiangtao Ma, Haoli Zhao, Yan Int J Med Sci Research Paper Traumatic brain injury is a medical event of global concern, and a growing body of research suggests that circular RNAs can play very important roles in traumatic brain injury. To explore the functions of more novel and valuable circular RNA in traumatic brain injury response, a moderate traumatic brain injury in rats was established and comprehensive analysis of circular RNA expression profiles in rat cerebral cortex was done. As a result, 301 up-regulated and 284 down-regulated circular RNAs were obtained in moderate traumatic brain injury rats, the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis were performed based on the circular RNA's host genes, and a circRNA-miRNA interaction network based on differentially expressed circular RNAs was constructed. Also, four circular RNAs were validated by RT-qPCR and Sanger sequencing. This study showed that differentially expressed circular RNAs existed between rat cerebral cortex after moderate traumatic brain injury and control. And this will provide valuable information for circular RNA research in the field of traumatic brain injury. Ivyspring International Publisher 2022-04-18 /pmc/articles/PMC9108397/ /pubmed/35582420 http://dx.doi.org/10.7150/ijms.71769 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Li, Gang
Li, Shaoping
Liu, Ruining
Yu, Jiangtao
Ma, Haoli
Zhao, Yan
Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title_full Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title_fullStr Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title_full_unstemmed Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title_short Comprehensive analysis of circRNA expression profiles in rat cerebral cortex after moderate traumatic brain injury
title_sort comprehensive analysis of circrna expression profiles in rat cerebral cortex after moderate traumatic brain injury
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9108397/
https://www.ncbi.nlm.nih.gov/pubmed/35582420
http://dx.doi.org/10.7150/ijms.71769
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