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Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging
SIGNIFICANCE: Hyperspectral imaging (HSI) provides rich spectral information for improved histopathological cancer detection. However, acquiring high-resolution HSI data for whole-slide imaging (WSI) can be time-consuming and requires a huge amount of storage space. AIM: WSI using a color camera can...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9110022/ https://www.ncbi.nlm.nih.gov/pubmed/35578386 http://dx.doi.org/10.1117/1.JBO.27.5.056502 |
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author | Ma, Ling Rathgeb, Armand Mubarak, Hasan Tran, Minh Fei, Baowei |
author_facet | Ma, Ling Rathgeb, Armand Mubarak, Hasan Tran, Minh Fei, Baowei |
author_sort | Ma, Ling |
collection | PubMed |
description | SIGNIFICANCE: Hyperspectral imaging (HSI) provides rich spectral information for improved histopathological cancer detection. However, acquiring high-resolution HSI data for whole-slide imaging (WSI) can be time-consuming and requires a huge amount of storage space. AIM: WSI using a color camera can be achieved with fast speed, high image resolution, and excellent image quality due to the established techniques. We aim to develop an RGB-guided unsupervised hyperspectral super-resolution reconstruction method that is hypothesized to improve image quality while maintaining the spectral characteristics. APPROACH: High-resolution hyperspectral images of 32 histologic slides were obtained via automated WSI. High-resolution RGB histology images were registered to the hyperspectral images for RGB guidance. An unsupervised super-resolution network was trained to take the downsampled low-resolution hyperspectral patches (LR-HSI) and high-resolution RGB patches (HR-RGB) as inputs to reconstruct high-resolution hyperspectral patches (HR-HSI). Then, an Inception-based network was trained with the HR-RGB, original HR-HSI, and generated HR-HSI, respectively, for whole-slide histopathological cancer detection. RESULTS: Our super-resolution reconstruction network generated high-resolution hyperspectral images with well-maintained spectral characteristics and improved image quality. Image classification using the original hyperspectral data outperformed RGB because of the extra spectral information. The generated hyperspectral image patches further improved the results. CONCLUSIONS: The proposed method potentially reduces image acquisition time, saves storage space without compromising image quality, and improves the image classification performance. |
format | Online Article Text |
id | pubmed-9110022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-91100222022-05-19 Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging Ma, Ling Rathgeb, Armand Mubarak, Hasan Tran, Minh Fei, Baowei J Biomed Opt Microscopy SIGNIFICANCE: Hyperspectral imaging (HSI) provides rich spectral information for improved histopathological cancer detection. However, acquiring high-resolution HSI data for whole-slide imaging (WSI) can be time-consuming and requires a huge amount of storage space. AIM: WSI using a color camera can be achieved with fast speed, high image resolution, and excellent image quality due to the established techniques. We aim to develop an RGB-guided unsupervised hyperspectral super-resolution reconstruction method that is hypothesized to improve image quality while maintaining the spectral characteristics. APPROACH: High-resolution hyperspectral images of 32 histologic slides were obtained via automated WSI. High-resolution RGB histology images were registered to the hyperspectral images for RGB guidance. An unsupervised super-resolution network was trained to take the downsampled low-resolution hyperspectral patches (LR-HSI) and high-resolution RGB patches (HR-RGB) as inputs to reconstruct high-resolution hyperspectral patches (HR-HSI). Then, an Inception-based network was trained with the HR-RGB, original HR-HSI, and generated HR-HSI, respectively, for whole-slide histopathological cancer detection. RESULTS: Our super-resolution reconstruction network generated high-resolution hyperspectral images with well-maintained spectral characteristics and improved image quality. Image classification using the original hyperspectral data outperformed RGB because of the extra spectral information. The generated hyperspectral image patches further improved the results. CONCLUSIONS: The proposed method potentially reduces image acquisition time, saves storage space without compromising image quality, and improves the image classification performance. Society of Photo-Optical Instrumentation Engineers 2022-05-16 2022-05 /pmc/articles/PMC9110022/ /pubmed/35578386 http://dx.doi.org/10.1117/1.JBO.27.5.056502 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Microscopy Ma, Ling Rathgeb, Armand Mubarak, Hasan Tran, Minh Fei, Baowei Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title | Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title_full | Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title_fullStr | Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title_full_unstemmed | Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title_short | Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
title_sort | unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging |
topic | Microscopy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9110022/ https://www.ncbi.nlm.nih.gov/pubmed/35578386 http://dx.doi.org/10.1117/1.JBO.27.5.056502 |
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