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Development of a system for the automated identification of herbarium specimens with high accuracy

Herbarium specimens are dried plants mounted onto paper. They are used by a limited number of researchers, such as plant taxonomists, as a source of information on morphology and distribution. Recently, digitised herbarium specimens have begun to be used in comprehensive research to address broader...

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Autores principales: Shirai, Masato, Takano, Atsuko, Kurosawa, Takahide, Inoue, Masahito, Tagane, Shuichiro, Tanimoto, Tomoya, Koganeyama, Tohru, Sato, Hirayuki, Terasawa, Tomohiko, Horie, Takehito, Mandai, Isao, Akihiro, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9110755/
https://www.ncbi.nlm.nih.gov/pubmed/35577859
http://dx.doi.org/10.1038/s41598-022-11450-y
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author Shirai, Masato
Takano, Atsuko
Kurosawa, Takahide
Inoue, Masahito
Tagane, Shuichiro
Tanimoto, Tomoya
Koganeyama, Tohru
Sato, Hirayuki
Terasawa, Tomohiko
Horie, Takehito
Mandai, Isao
Akihiro, Takashi
author_facet Shirai, Masato
Takano, Atsuko
Kurosawa, Takahide
Inoue, Masahito
Tagane, Shuichiro
Tanimoto, Tomoya
Koganeyama, Tohru
Sato, Hirayuki
Terasawa, Tomohiko
Horie, Takehito
Mandai, Isao
Akihiro, Takashi
author_sort Shirai, Masato
collection PubMed
description Herbarium specimens are dried plants mounted onto paper. They are used by a limited number of researchers, such as plant taxonomists, as a source of information on morphology and distribution. Recently, digitised herbarium specimens have begun to be used in comprehensive research to address broader issues. However, some specimens have been misidentified, and if used, there is a risk of drawing incorrect conclusions. In this study, we successfully developed a system for identifying taxon names with high accuracy using an image recognition system. We developed a system with an accuracy of 96.4% using 500,554 specimen images of 2171 plant taxa (2064 species, 9 subspecies, 88 varieties, and 10 forms in 192 families) that grow in Japan. We clarified where the artificial intelligence is looking to make decisions, and which taxa is being misidentified. As the system can be applied to digitalised images worldwide, it is useful for selecting and correcting misidentified herbarium specimens.
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spelling pubmed-91107552022-05-18 Development of a system for the automated identification of herbarium specimens with high accuracy Shirai, Masato Takano, Atsuko Kurosawa, Takahide Inoue, Masahito Tagane, Shuichiro Tanimoto, Tomoya Koganeyama, Tohru Sato, Hirayuki Terasawa, Tomohiko Horie, Takehito Mandai, Isao Akihiro, Takashi Sci Rep Article Herbarium specimens are dried plants mounted onto paper. They are used by a limited number of researchers, such as plant taxonomists, as a source of information on morphology and distribution. Recently, digitised herbarium specimens have begun to be used in comprehensive research to address broader issues. However, some specimens have been misidentified, and if used, there is a risk of drawing incorrect conclusions. In this study, we successfully developed a system for identifying taxon names with high accuracy using an image recognition system. We developed a system with an accuracy of 96.4% using 500,554 specimen images of 2171 plant taxa (2064 species, 9 subspecies, 88 varieties, and 10 forms in 192 families) that grow in Japan. We clarified where the artificial intelligence is looking to make decisions, and which taxa is being misidentified. As the system can be applied to digitalised images worldwide, it is useful for selecting and correcting misidentified herbarium specimens. Nature Publishing Group UK 2022-05-16 /pmc/articles/PMC9110755/ /pubmed/35577859 http://dx.doi.org/10.1038/s41598-022-11450-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shirai, Masato
Takano, Atsuko
Kurosawa, Takahide
Inoue, Masahito
Tagane, Shuichiro
Tanimoto, Tomoya
Koganeyama, Tohru
Sato, Hirayuki
Terasawa, Tomohiko
Horie, Takehito
Mandai, Isao
Akihiro, Takashi
Development of a system for the automated identification of herbarium specimens with high accuracy
title Development of a system for the automated identification of herbarium specimens with high accuracy
title_full Development of a system for the automated identification of herbarium specimens with high accuracy
title_fullStr Development of a system for the automated identification of herbarium specimens with high accuracy
title_full_unstemmed Development of a system for the automated identification of herbarium specimens with high accuracy
title_short Development of a system for the automated identification of herbarium specimens with high accuracy
title_sort development of a system for the automated identification of herbarium specimens with high accuracy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9110755/
https://www.ncbi.nlm.nih.gov/pubmed/35577859
http://dx.doi.org/10.1038/s41598-022-11450-y
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