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Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients

The aim of this study was to compare whole lung CT density histograms to predict critical illness outcome and hospital length of stay in a cohort of 80 COVID-19 patients. CT chest images on segmented lungs were retrospectively analyzed. Functional Principal Component Analysis (FPCA) was used to find...

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Autores principales: Shalmon, Tamar, Salazar, Pascal, Horie, Miho, Hanneman, Kate, Pakkal, Mini, Anwari, Vahid, Fratesi, Jennifer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9114017/
https://www.ncbi.nlm.nih.gov/pubmed/35581369
http://dx.doi.org/10.1038/s41598-022-12311-4
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author Shalmon, Tamar
Salazar, Pascal
Horie, Miho
Hanneman, Kate
Pakkal, Mini
Anwari, Vahid
Fratesi, Jennifer
author_facet Shalmon, Tamar
Salazar, Pascal
Horie, Miho
Hanneman, Kate
Pakkal, Mini
Anwari, Vahid
Fratesi, Jennifer
author_sort Shalmon, Tamar
collection PubMed
description The aim of this study was to compare whole lung CT density histograms to predict critical illness outcome and hospital length of stay in a cohort of 80 COVID-19 patients. CT chest images on segmented lungs were retrospectively analyzed. Functional Principal Component Analysis (FPCA) was used to find the main modes of variations on CT density histograms. CT density features, the CT severity score, the COVID-GRAM score and the patient clinical data were assessed for predicting the patient outcome using logistic regression models and survival analysis. ROC analysis predictors of critically ill status: 87.5th percentile CT density (Q875)—AUC 0.88 95% CI (0.79 0.94), F1-CT—AUC 0.87 (0.77 0.93) Standard Deviation (SD-CT)—AUC 0.86 (0.73, 0.93). Multivariate models combining CT-density predictors and Neutrophil–Lymphocyte Ratio showed the highest accuracy. SD-CT, Q875 and F1 score were significant predictors of hospital length of stay (LOS) while controlling for hospital death using competing risks models. Moreover, two multivariate Fine-Gray regression models combining the clinical variables: age, NLR, Contrast CT factor with either Q875 or F1 CT-density predictors revealed significant effects for the prediction of LOS incidence in presence of a competing risk (death) and acceptable predictive performances (Bootstrapped C-index 0.74 [0.70 0.78]).
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spelling pubmed-91140172022-05-19 Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients Shalmon, Tamar Salazar, Pascal Horie, Miho Hanneman, Kate Pakkal, Mini Anwari, Vahid Fratesi, Jennifer Sci Rep Article The aim of this study was to compare whole lung CT density histograms to predict critical illness outcome and hospital length of stay in a cohort of 80 COVID-19 patients. CT chest images on segmented lungs were retrospectively analyzed. Functional Principal Component Analysis (FPCA) was used to find the main modes of variations on CT density histograms. CT density features, the CT severity score, the COVID-GRAM score and the patient clinical data were assessed for predicting the patient outcome using logistic regression models and survival analysis. ROC analysis predictors of critically ill status: 87.5th percentile CT density (Q875)—AUC 0.88 95% CI (0.79 0.94), F1-CT—AUC 0.87 (0.77 0.93) Standard Deviation (SD-CT)—AUC 0.86 (0.73, 0.93). Multivariate models combining CT-density predictors and Neutrophil–Lymphocyte Ratio showed the highest accuracy. SD-CT, Q875 and F1 score were significant predictors of hospital length of stay (LOS) while controlling for hospital death using competing risks models. Moreover, two multivariate Fine-Gray regression models combining the clinical variables: age, NLR, Contrast CT factor with either Q875 or F1 CT-density predictors revealed significant effects for the prediction of LOS incidence in presence of a competing risk (death) and acceptable predictive performances (Bootstrapped C-index 0.74 [0.70 0.78]). Nature Publishing Group UK 2022-05-17 /pmc/articles/PMC9114017/ /pubmed/35581369 http://dx.doi.org/10.1038/s41598-022-12311-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shalmon, Tamar
Salazar, Pascal
Horie, Miho
Hanneman, Kate
Pakkal, Mini
Anwari, Vahid
Fratesi, Jennifer
Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title_full Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title_fullStr Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title_full_unstemmed Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title_short Predefined and data driven CT densitometric features predict critical illness and hospital length of stay in COVID-19 patients
title_sort predefined and data driven ct densitometric features predict critical illness and hospital length of stay in covid-19 patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9114017/
https://www.ncbi.nlm.nih.gov/pubmed/35581369
http://dx.doi.org/10.1038/s41598-022-12311-4
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