Cargando…

A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma

Background: TEA domain transcription factor 4 (TEAD4) is a member of the transcriptional enhancer factor (TEF) family of transcription factors, which is studied to be linked to the tumorigenesis and progression of various forms of cancers, including lung adenocarcinoma (LUAD). However, the specific...

Descripción completa

Detalles Bibliográficos
Autores principales: Gong, Xiaoxia, Li, Ning, Sun, Chen, Li, Zhaoshui, Xie, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9114646/
https://www.ncbi.nlm.nih.gov/pubmed/35600867
http://dx.doi.org/10.3389/fphar.2022.874780
_version_ 1784709824265584640
author Gong, Xiaoxia
Li, Ning
Sun, Chen
Li, Zhaoshui
Xie, Hao
author_facet Gong, Xiaoxia
Li, Ning
Sun, Chen
Li, Zhaoshui
Xie, Hao
author_sort Gong, Xiaoxia
collection PubMed
description Background: TEA domain transcription factor 4 (TEAD4) is a member of the transcriptional enhancer factor (TEF) family of transcription factors, which is studied to be linked to the tumorigenesis and progression of various forms of cancers, including lung adenocarcinoma (LUAD). However, the specific function of this gene in the progression of LUAD remains to be explored. Method: A total of 19 genes related to the Hippo pathway were analyzed to identify the significant genes involved in LUAD progression. The TCGA-LUAD data (n = 585) from public databases were mined, and the differentially expressed genes (DEGs) in patients with the differential level of TEAD4 were identified. The univariate Cox regression, zero LASSO regression coefficients, and multivariate Cox regression were performed to identify the independent prognostic signatures. The immune microenvironment estimation in the two subgroups, including immune cell infiltration, HLA family genes, and immune checkpoint genes, was assessed. The Gene Set Enrichment Analysis (GSEA) and GO were conducted to analyze the functional enrichment of DEGs between the two risk groups. The potential drugs for the high-risk subtypes were forecasted via the mode of action (moa) module of the connectivity map (CMap) database. Results: TEAD4 was found to be significantly correlated with poor prognosis in LUAD-patients. A total of 102 DEGs in TEAD4-high vs. TEAD4-low groups were identified. Among these DEGs, four genes (CPS1, ANLN, RHOV, and KRT6A) were identified as the independent prognostic signature to conduct the Cox risk model. The immune microenvironment estimation indicated a strong relationship between the high TEAD4 expression and immunotherapeutic resistance. The GSEA and GO showed that pathways, including cell cycle regulation, were enriched in the high-risk group, while immune response-related and metabolism biological processes were enriched in the low-risk group. Several small molecular perturbagens targeting CFTR or PLA2G1B, by the mode of action (moa) modules of the glucocorticoid receptor agonist, cyclooxygenase inhibitor, and NFkB pathway inhibitor, were predicted to be suited for the high-risk subtypes based on the high TEAD4 expression. Conclusion: The current study revealed TEAD4 is an immune regulation–related predictor of prognosis and a novel therapeutic target for LUAD.
format Online
Article
Text
id pubmed-9114646
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-91146462022-05-19 A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma Gong, Xiaoxia Li, Ning Sun, Chen Li, Zhaoshui Xie, Hao Front Pharmacol Pharmacology Background: TEA domain transcription factor 4 (TEAD4) is a member of the transcriptional enhancer factor (TEF) family of transcription factors, which is studied to be linked to the tumorigenesis and progression of various forms of cancers, including lung adenocarcinoma (LUAD). However, the specific function of this gene in the progression of LUAD remains to be explored. Method: A total of 19 genes related to the Hippo pathway were analyzed to identify the significant genes involved in LUAD progression. The TCGA-LUAD data (n = 585) from public databases were mined, and the differentially expressed genes (DEGs) in patients with the differential level of TEAD4 were identified. The univariate Cox regression, zero LASSO regression coefficients, and multivariate Cox regression were performed to identify the independent prognostic signatures. The immune microenvironment estimation in the two subgroups, including immune cell infiltration, HLA family genes, and immune checkpoint genes, was assessed. The Gene Set Enrichment Analysis (GSEA) and GO were conducted to analyze the functional enrichment of DEGs between the two risk groups. The potential drugs for the high-risk subtypes were forecasted via the mode of action (moa) module of the connectivity map (CMap) database. Results: TEAD4 was found to be significantly correlated with poor prognosis in LUAD-patients. A total of 102 DEGs in TEAD4-high vs. TEAD4-low groups were identified. Among these DEGs, four genes (CPS1, ANLN, RHOV, and KRT6A) were identified as the independent prognostic signature to conduct the Cox risk model. The immune microenvironment estimation indicated a strong relationship between the high TEAD4 expression and immunotherapeutic resistance. The GSEA and GO showed that pathways, including cell cycle regulation, were enriched in the high-risk group, while immune response-related and metabolism biological processes were enriched in the low-risk group. Several small molecular perturbagens targeting CFTR or PLA2G1B, by the mode of action (moa) modules of the glucocorticoid receptor agonist, cyclooxygenase inhibitor, and NFkB pathway inhibitor, were predicted to be suited for the high-risk subtypes based on the high TEAD4 expression. Conclusion: The current study revealed TEAD4 is an immune regulation–related predictor of prognosis and a novel therapeutic target for LUAD. Frontiers Media S.A. 2022-05-04 /pmc/articles/PMC9114646/ /pubmed/35600867 http://dx.doi.org/10.3389/fphar.2022.874780 Text en Copyright © 2022 Gong, Li, Sun, Li and Xie. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Gong, Xiaoxia
Li, Ning
Sun, Chen
Li, Zhaoshui
Xie, Hao
A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title_full A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title_fullStr A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title_full_unstemmed A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title_short A Four-Gene Prognostic Signature Based on the TEAD4 Differential Expression Predicts Overall Survival and Immune Microenvironment Estimation in Lung Adenocarcinoma
title_sort four-gene prognostic signature based on the tead4 differential expression predicts overall survival and immune microenvironment estimation in lung adenocarcinoma
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9114646/
https://www.ncbi.nlm.nih.gov/pubmed/35600867
http://dx.doi.org/10.3389/fphar.2022.874780
work_keys_str_mv AT gongxiaoxia afourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT lining afourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT sunchen afourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT lizhaoshui afourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT xiehao afourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT gongxiaoxia fourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT lining fourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT sunchen fourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT lizhaoshui fourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma
AT xiehao fourgeneprognosticsignaturebasedonthetead4differentialexpressionpredictsoverallsurvivalandimmunemicroenvironmentestimationinlungadenocarcinoma