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Clustering compositional data using Dirichlet mixture model
A model-based clustering method for compositional data is explored in this article. Most methods for compositional data analysis require some kind of transformation. The proposed method builds a mixture model using Dirichlet distribution which works with the unit sum constraint. The mixture model us...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9116644/ https://www.ncbi.nlm.nih.gov/pubmed/35584127 http://dx.doi.org/10.1371/journal.pone.0268438 |
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author | Pal, Samyajoy Heumann, Christian |
author_facet | Pal, Samyajoy Heumann, Christian |
author_sort | Pal, Samyajoy |
collection | PubMed |
description | A model-based clustering method for compositional data is explored in this article. Most methods for compositional data analysis require some kind of transformation. The proposed method builds a mixture model using Dirichlet distribution which works with the unit sum constraint. The mixture model uses a hard EM algorithm with some modification to overcome the problem of fast convergence with empty clusters. This work includes a rigorous simulation study to evaluate the performance of the proposed method over varied dimensions, number of clusters, and overlap. The performance of the model is also compared with other popular clustering algorithms often used for compositional data analysis (e.g. KMeans, Gaussian mixture model (GMM) Gaussian Mixture Model with Hard EM (Hard GMM), partition around medoids (PAM), Clustering Large Applications based on Randomized Search (CLARANS), Density-Based Spatial Clustering of Applications with Noise (DBSCAN) etc.) for simulated data as well as two real data problems coming from the business and marketing domain and physical science domain, respectively. The study has shown promising results exploiting different distributional patterns of compositional data. |
format | Online Article Text |
id | pubmed-9116644 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-91166442022-05-19 Clustering compositional data using Dirichlet mixture model Pal, Samyajoy Heumann, Christian PLoS One Research Article A model-based clustering method for compositional data is explored in this article. Most methods for compositional data analysis require some kind of transformation. The proposed method builds a mixture model using Dirichlet distribution which works with the unit sum constraint. The mixture model uses a hard EM algorithm with some modification to overcome the problem of fast convergence with empty clusters. This work includes a rigorous simulation study to evaluate the performance of the proposed method over varied dimensions, number of clusters, and overlap. The performance of the model is also compared with other popular clustering algorithms often used for compositional data analysis (e.g. KMeans, Gaussian mixture model (GMM) Gaussian Mixture Model with Hard EM (Hard GMM), partition around medoids (PAM), Clustering Large Applications based on Randomized Search (CLARANS), Density-Based Spatial Clustering of Applications with Noise (DBSCAN) etc.) for simulated data as well as two real data problems coming from the business and marketing domain and physical science domain, respectively. The study has shown promising results exploiting different distributional patterns of compositional data. Public Library of Science 2022-05-18 /pmc/articles/PMC9116644/ /pubmed/35584127 http://dx.doi.org/10.1371/journal.pone.0268438 Text en © 2022 Pal, Heumann https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pal, Samyajoy Heumann, Christian Clustering compositional data using Dirichlet mixture model |
title | Clustering compositional data using Dirichlet mixture model |
title_full | Clustering compositional data using Dirichlet mixture model |
title_fullStr | Clustering compositional data using Dirichlet mixture model |
title_full_unstemmed | Clustering compositional data using Dirichlet mixture model |
title_short | Clustering compositional data using Dirichlet mixture model |
title_sort | clustering compositional data using dirichlet mixture model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9116644/ https://www.ncbi.nlm.nih.gov/pubmed/35584127 http://dx.doi.org/10.1371/journal.pone.0268438 |
work_keys_str_mv | AT palsamyajoy clusteringcompositionaldatausingdirichletmixturemodel AT heumannchristian clusteringcompositionaldatausingdirichletmixturemodel |