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A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242)
BACKGROUND: Assessing the effect of alcohol consumption on biological age is essential for understanding alcohol use‐related comorbidities and mortality. Previously developed epigenetic clocks are mainly based on DNA methylation in heterogeneous cell types, which provide limited knowledge on the imp...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9117474/ https://www.ncbi.nlm.nih.gov/pubmed/35257385 http://dx.doi.org/10.1111/acer.14803 |
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author | Liang, Xiaoyu Sinha, Rajita Justice, Amy C. Cohen, Mardge H. Aouizerat, Bradley E. Xu, Ke |
author_facet | Liang, Xiaoyu Sinha, Rajita Justice, Amy C. Cohen, Mardge H. Aouizerat, Bradley E. Xu, Ke |
author_sort | Liang, Xiaoyu |
collection | PubMed |
description | BACKGROUND: Assessing the effect of alcohol consumption on biological age is essential for understanding alcohol use‐related comorbidities and mortality. Previously developed epigenetic clocks are mainly based on DNA methylation in heterogeneous cell types, which provide limited knowledge on the impacts of alcohol consumption at the individual cellular level. Evidence shows that monocytes play an important role in both alcohol‐induced pathophysiology and the aging process. In this study, we developed a novel monocyte‐based DNA methylation clock (MonoDNAmAge) to assess the impact of alcohol consumption on monocyte age. METHODS: A machine learning method was applied to select a set of chronological age‐associated DNA methylation CpG sites from 1202 monocyte methylomes. Pearson correlation was tested between MonoDNAmAge and chronological age in three independent cohorts (N (total) = 2242). Using the MonoDNAmAge clock and four established clocks (i.e., HorvathDNAmAge, HannumDNAmAge, PhenoDNAmAge, GrimDNAmAge), we then evaluated the effect of alcohol consumption on epigenetic aging in the three cohorts [i.e., Yale Stress Center Community Study (YSCCS), Veteran Aging Cohort Study (VACS), Women's Interagency HIV Study (WIHS)] using linear and quadratic models. RESULTS: The MonoDNAmAge, comprised of 186 CpG sites, was moderately to strongly correlated with chronological age in the three cohorts (r = 0.90, p = 3.12E−181 in YSCCS; r = 0.54, p = 1.75E−96 in VACS; r = 0.66, p = 1.50E−60 in WIHS). More importantly, we found a nonlinear association between MonoDNAmAge and alcohol consumption (p (model) = 4.55E−08, [Formula: see text] = 7.80E−08 in YSCCS; p (model) = 1.85E−02, [Formula: see text] = 3.46E−02 in VACS). Heavy alcohol consumption increased EAA(MonoDNAmAge) up to 1.60 years while light alcohol consumption decreased EAA(MonoDNAmAge) up to 2.66 years. These results were corroborated by the four established epigenetic clocks (i.e., HorvathDNAmAge, HannumDNAmAge, PhenoDNAmAge, GrimDNAmAge). CONCLUSIONS: The results suggest a nonlinear relationship between alcohol consumption and its effects on epigenetic age. Considering adverse effects of alcohol consumption on health, nonlinear effects of alcohol use should be interpreted with caution. The findings, for the first time, highlight the complex effects of alcohol consumption on biological aging. |
format | Online Article Text |
id | pubmed-9117474 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91174742022-12-14 A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) Liang, Xiaoyu Sinha, Rajita Justice, Amy C. Cohen, Mardge H. Aouizerat, Bradley E. Xu, Ke Alcohol Clin Exp Res Human and Animal Genetics BACKGROUND: Assessing the effect of alcohol consumption on biological age is essential for understanding alcohol use‐related comorbidities and mortality. Previously developed epigenetic clocks are mainly based on DNA methylation in heterogeneous cell types, which provide limited knowledge on the impacts of alcohol consumption at the individual cellular level. Evidence shows that monocytes play an important role in both alcohol‐induced pathophysiology and the aging process. In this study, we developed a novel monocyte‐based DNA methylation clock (MonoDNAmAge) to assess the impact of alcohol consumption on monocyte age. METHODS: A machine learning method was applied to select a set of chronological age‐associated DNA methylation CpG sites from 1202 monocyte methylomes. Pearson correlation was tested between MonoDNAmAge and chronological age in three independent cohorts (N (total) = 2242). Using the MonoDNAmAge clock and four established clocks (i.e., HorvathDNAmAge, HannumDNAmAge, PhenoDNAmAge, GrimDNAmAge), we then evaluated the effect of alcohol consumption on epigenetic aging in the three cohorts [i.e., Yale Stress Center Community Study (YSCCS), Veteran Aging Cohort Study (VACS), Women's Interagency HIV Study (WIHS)] using linear and quadratic models. RESULTS: The MonoDNAmAge, comprised of 186 CpG sites, was moderately to strongly correlated with chronological age in the three cohorts (r = 0.90, p = 3.12E−181 in YSCCS; r = 0.54, p = 1.75E−96 in VACS; r = 0.66, p = 1.50E−60 in WIHS). More importantly, we found a nonlinear association between MonoDNAmAge and alcohol consumption (p (model) = 4.55E−08, [Formula: see text] = 7.80E−08 in YSCCS; p (model) = 1.85E−02, [Formula: see text] = 3.46E−02 in VACS). Heavy alcohol consumption increased EAA(MonoDNAmAge) up to 1.60 years while light alcohol consumption decreased EAA(MonoDNAmAge) up to 2.66 years. These results were corroborated by the four established epigenetic clocks (i.e., HorvathDNAmAge, HannumDNAmAge, PhenoDNAmAge, GrimDNAmAge). CONCLUSIONS: The results suggest a nonlinear relationship between alcohol consumption and its effects on epigenetic age. Considering adverse effects of alcohol consumption on health, nonlinear effects of alcohol use should be interpreted with caution. The findings, for the first time, highlight the complex effects of alcohol consumption on biological aging. John Wiley and Sons Inc. 2022-03-17 2022-05 /pmc/articles/PMC9117474/ /pubmed/35257385 http://dx.doi.org/10.1111/acer.14803 Text en © 2022 The Authors. Alcoholism: Clinical & Experimental Research published by Wiley Periodicals LLC on behalf of Research Society on Alcoholism. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Human and Animal Genetics Liang, Xiaoyu Sinha, Rajita Justice, Amy C. Cohen, Mardge H. Aouizerat, Bradley E. Xu, Ke A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title | A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title_full | A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title_fullStr | A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title_full_unstemmed | A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title_short | A new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (N = 2242) |
title_sort | new monocyte epigenetic clock reveals nonlinear effects of alcohol consumption on biological aging in three independent cohorts (n = 2242) |
topic | Human and Animal Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9117474/ https://www.ncbi.nlm.nih.gov/pubmed/35257385 http://dx.doi.org/10.1111/acer.14803 |
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